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SCNpilot_expt_500_bf_scaffold_6963

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6963_1
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..222
DNA (222bp) protein (74aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248856A
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KGB56757.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_6963_2
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265..1371)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SLA0_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KGB56755.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_6963_3
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1465..2553)
DNA (1089bp) protein (363aa)
LuxR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488EC9 rbh
Regulatory protein LuxR {ECO:0000313|EMBL:KGB56754.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
regulatory protein LuxR rbh
SCNpilot_expt_500_bf_scaffold_6963_4
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2603..3508
DNA (906bp) protein (302aa)
alpha/beta hydrolase domain-containing protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488ECA rbh
alpha/beta hydrolase domain-containing protein rbh
Alpha/beta hydrolase domain-containing protein {ECO:0000313|EMBL:AGH51356.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_6963_5
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3531..4307)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DE23_9PROT rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KGB56752.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_500_bf_scaffold_6963_6
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4446..5234
DNA (789bp) protein (263aa)
3-alpha-hydroxysteroid dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024885B2 rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KGB56750.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_500_bf_scaffold_6963_7
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5649..6374
DNA (726bp) protein (242aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S5P1_9SPHN
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KGB56746.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_6963_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6371..7459
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VBH2_SPHWW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ69638.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_6963_9
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7456..7923
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SLD9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB56744.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6963_10
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7930..8397)
DNA (468bp) protein (156aa)
Transcriptional regulator, AsnC family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VBL2_SPHWW
AsnC family transcriptional regulator {ECO:0000313|EMBL:KGB56743.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
AsnC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_6963_11
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8394..8897)
DNA (504bp) protein (168aa)
AsnC family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248BB76
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:KGB56742.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
AsnC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_6963_12
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8965..9714)
DNA (750bp) protein (250aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248BB75 rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KGB56739.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_500_bf_scaffold_6963_13
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9726..10847)
DNA (1122bp) protein (374aa)
Acetyl-CoA acetyltransferase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S187_9SPHN rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KGB56738.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
acetyl-CoA acetyltransferase rbh
SCNpilot_expt_500_bf_scaffold_6963_14
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10852..11223)
DNA (372bp) protein (124aa)
Steroid delta-isomerase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SDH2_9SPHN
steroid delta-isomerase
Steroid delta-isomerase {ECO:0000313|EMBL:AGH48697.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_6963_15
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11612..12217
DNA (606bp) protein (202aa)
NADPH-dependent FMN reductase; K00299 FMN reductase [EC:1.5.1.38]
NADPH-dependent FMN reductase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ID85_9SPHN
NADPH-dependent FMN reductase {ECO:0000313|EMBL:CCA90260.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_500_bf_scaffold_6963_16
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12207..12755
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00035EA427
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:KGB56769.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6963_17
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12964..13470
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DER3_9PROT
Polyketide cyclase / dehydrase and lipid transport {ECO:0000313|EMBL:KGB56767.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6963_18
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13605..15992
DNA (2388bp) protein (796aa)
Putative TonB-dependent receptor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YQ55_9SPHN rbh
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAD50797.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_6963_19
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16052..16597
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RWY7_9SPHN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGH48056.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_6963_20
Rhodococcus equi, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16607..17386)
DNA (780bp) protein (260aa)
oxidoreductase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248BE70 rbh
glucose 1-dehydrogenase rbh
Putative glucose 1-dehydrogenase {ECO:0000313|EMBL:CBH50631.1}; TaxID=685727 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus equi (strain 103S) (Corynebacterium equi).;"
SCNpilot_expt_500_bf_scaffold_6963_21
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17397..17978)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024889F6
Stress responsive alpha-beta barrel domain protein {ECO:0000313|EMBL:KGB56762.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6963_22
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17971..18321)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8FDS5_MYCSM
Uncharacterized protein {ECO:0000313|EMBL:KGB56761.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
Displaying 22 items

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