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SCNpilot_expt_500_bf_scaffold_8571

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_8571_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..193)
DNA (192bp) protein (64aa)
allantoin permease n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62633
Cytosine/purine/uracil/thiamine/allantoin permease family protein {ECO:0000313|EMBL:EGD57748.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
cytosine/purines uracil thiamine allantoin permease
SCNpilot_expt_500_bf_scaffold_8571_2
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(285..1238)
DNA (954bp) protein (318aa)
Transcriptional regulator, AraC family n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCH3_9SPHN rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EGD57745.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
AraC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_8571_3
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1350..2243
DNA (894bp) protein (298aa)
NADPH dependend quinone reductase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B314B3 rbh
Uncharacterized protein {ECO:0000313|EMBL:EGD57750.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_8571_4
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2254..2805
DNA (552bp) protein (184aa)
L-carnitine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02129}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_02129};; Short=L-CDH {ECO:0000256|HAMAP-Rule:MF_02129};; EC=1.1.1.108 {ECO:0000256|HAMAP-Rule:MF_02129};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7B1FE
3-hydroxyacyl-CoA dehydrogenase
SCNpilot_expt_500_bf_scaffold_8571_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2751..3587
DNA (837bp) protein (279aa)
L-carnitine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02129}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_02129};; Short=L-CDH {ECO:0000256|HAMAP-Rule:MF_02129};; EC=1.1.1.108 {ECO:0000256|HAMAP-Rule:MF_02129};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7B1FE
bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase
SCNpilot_expt_500_bf_scaffold_8571_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3616..4662
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4E15E rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM32476.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
alpha/beta hydrolase rbh
SCNpilot_expt_500_bf_scaffold_8571_7
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4702..5196)
DNA (495bp) protein (165aa)
DNA-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B48BDA
YbaK/prolyl-tRNA synthetase associated region {ECO:0000313|EMBL:EGD58285.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
YbaK/prolyl-tRNA synthetase associated domain-containing protein
SCNpilot_expt_500_bf_scaffold_8571_8
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5193..6047)
DNA (855bp) protein (285aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
formyltetrahydrofolate deformylase; K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10] rbh
Formyltetrahydrofolate deformylase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAT8_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_8571_9
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6167..7087
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4ED41 rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EGD58283.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
oxyR; LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_8571_10
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7084..7335)
DNA (252bp) protein (84aa)
sarcosine oxidase subunit gamma; K00305 sarcosine oxidase, subunit gamma [EC:1.5.3.1]
sarcosine oxidase subunit gamma n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3D50B
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:EGD58282.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_expt_500_bf_scaffold_8571_11
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7563..7922)
DNA (360bp) protein (120aa)
sarcosine oxidase subunit alpha family; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
sarcosine oxidase subunit alpha, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4A0AD
Sarcosine oxidase, subunit alpha {ECO:0000313|EMBL:EGD58281.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Displaying 11 items

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