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SCNpilot_expt_500_bf_scaffold_5069

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5069_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..634
DNA (633bp) protein (211aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B330EE
Chemotaxis protein CheY {ECO:0000313|EMBL:AJP71640.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Fis family nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
SCNpilot_expt_500_bf_scaffold_5069_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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697..2868
DNA (2172bp) protein (724aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
ATPase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B363A7 rbh
multi-sensor signal transduction histidine kinase rbh
SCNpilot_expt_500_bf_scaffold_5069_3
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2870..4195
DNA (1326bp) protein (442aa)
Response regulator n=1 Tax=Sphingomonas sp. S17 RepID=F3WSY3_9SPHN
NtrX protein {ECO:0000313|EMBL:GAN12974.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
two component sigma-54 specific Fis family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_5069_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4334..4825
DNA (492bp) protein (164aa)
RNA-binding protein Hfq n=1 Tax=Sphingomonas RepID=UPI000289F6A4
RNA-binding protein Hfq {ECO:0000256|SAAS:SAAS00067493}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hfq; host factor-I protein; K03666 host factor-I protein
SCNpilot_expt_500_bf_scaffold_5069_5
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4822..6117
DNA (1296bp) protein (432aa)
GTPase HflX n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035E1706 rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
HSR1-like GTP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_5069_6
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6118..6885)
DNA (768bp) protein (256aa)
nucleotide pyrophosphohydrolase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CAB25
Putative nucleoside triphosphate pyrophosphohydrolase {ECO:0000313|EMBL:GAL99319.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
nucleoside triphosphate pyrophosphohydrolase rbh
SCNpilot_expt_500_bf_scaffold_5069_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7195..8328)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A007_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50974.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
collagen and fibronectin-binding collagen-like cell surface-anchored protein FneE
SCNpilot_expt_500_bf_scaffold_5069_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8373..8762)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A889_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50973.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
Displaying 8 items

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