ggKbase home page

SCNpilot_expt_500_bf_scaffold_5142

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5142_1
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..297
DNA (297bp) protein (99aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
NADH-ubiquinone oxidoreductase, chain 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C9890
SCNpilot_expt_500_bf_scaffold_5142_2
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

301..2373
DNA (2073bp) protein (691aa)
NADH:ubiquinone oxidoreductase subunit L n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000360D5A0 rbh
NADH-quinone oxidoreductase subunit L {ECO:0000313|EMBL:GAL99633.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
NADH:ubiquinone oxidoreductase subunit L rbh
SCNpilot_expt_500_bf_scaffold_5142_3
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2384..3838
DNA (1455bp) protein (485aa)
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:KGB58721.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KGB58721.1};; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
proton-translocating NADH-quinone oxidoreductase subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3]
NADH:ubiquinone oxidoreductase subunit M n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B45914
SCNpilot_expt_500_bf_scaffold_5142_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3838..5250
DNA (1413bp) protein (471aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
NADH:ubiquinone oxidoreductase subunit N (EC:1.6.99.5) rbh
NADH:ubiquinone oxidoreductase subunit N n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B73397 rbh
SCNpilot_expt_500_bf_scaffold_5142_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5331..5951
DNA (621bp) protein (207aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
biotin-[acetyl-CoA-carboxylase] ligase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9B9B
Biotin--protein ligase {ECO:0000313|EMBL:KHA65580.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_5142_6
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5965..6747
DNA (783bp) protein (261aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
pantothenate kinase (EC:2.7.1.33); K03525 type III pantothenate kinase [EC:2.7.1.33] rbh
pantothenate kinase n=1 Tax=Sphingomonas melonis RepID=UPI00036C9B8B rbh
SCNpilot_expt_500_bf_scaffold_5142_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6829..8466
DNA (1638bp) protein (546aa)
RNA-metabolising metallo-beta-lactamase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B35BDF rbh
DNA, contig: SP650 {ECO:0000313|EMBL:GAN15034.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
RNA-metabolising metallo-beta-lactamase
SCNpilot_expt_500_bf_scaffold_5142_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8471..8746
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003770E10
Sphingomonas taxi strain 30a NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29369.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5142_9
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8752..11025)
DNA (2274bp) protein (758aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003657C3F rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP57561.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5142_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11217..12338
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3CB83 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIT05857.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5142_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12374..12811
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB187
Sphingomonas taxi strain 30a NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29366.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
Displaying 11 items

View Taxonomy