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SCNpilot_expt_500_bf_scaffold_5202

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5202_1
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39..419)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GKZ1_9SPHN
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_5202_2
Marinobacter santoriniensis, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(493..1347)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Oxytricha trifallax RepID=J9F9L7_9SPIT
Dentin sialophosphoprotein {ECO:0000313|EMBL:EMP55194.1}; TaxID=1288826 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter santoriniensis NKSG1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5202_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1503..2225)
DNA (723bp) protein (241aa)
Fis family transcriptional regulator n=1 Tax=Sphingomonas RepID=UPI000288FDA0 rbh
KDP operon transcriptional regulatory protein KdpE {ECO:0000313|EMBL:ENY80611.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
kdpE; KDP operon transcriptional regulatory protein KdpE; K07667 two-component system, OmpR family, KDP operon response regulator KdpE
SCNpilot_expt_500_bf_scaffold_5202_4
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2236..2454)
DNA (219bp) protein (73aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.
kdpC; potassium-transporting ATPase subunit C; K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12]
Potassium-transporting ATPase C chain n=1 Tax=Rhodovulum sp. PH10 RepID=J6UDN7_9RHOB
SCNpilot_expt_500_bf_scaffold_5202_5
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3181..4089
DNA (909bp) protein (303aa)
Uncharacterized protein (Fragment) n=1 Tax=Streptomyces ipomoeae 91-03 RepID=L1KL95_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EXU92327.1}; TaxID=1395572 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albulus PD-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5202_6
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4105..4848
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa VRFPA07 RepID=V8E8M5_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EXU92327.1}; TaxID=1395572 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albulus PD-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5202_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4815..6518)
DNA (1704bp) protein (568aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275, ECO:0000313|EMBL:AJP70611.1};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomona
kdpA; potassium-transporting ATPase A chain; K01546 K+-transporting ATPase ATPase A chain [EC:3.6.3.12]
ATPase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002895BB5
SCNpilot_expt_500_bf_scaffold_5202_8
unknown

Not on your lists

comp(6520..6609)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5202_9
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6865..8730
DNA (1866bp) protein (622aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
osmosensitive K+ channel signal transduction histidine kinase; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
osmosensitive K+ channel signal transduction histidine kinase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002880987
SCNpilot_expt_500_bf_scaffold_5202_10
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8669..9442
DNA (774bp) protein (258aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
osmosensitive K+ channel signal transduction histidine kinase n=1 Tax=Sphingomonas elodea RepID=UPI0002631036
osmosensitive K+ channel signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_5202_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9459..10760)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037202C6 rbh
Chloride channel protein {ECO:0000313|EMBL:GAO53276.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Cl-channel voltage-gated family protein
SCNpilot_expt_500_bf_scaffold_5202_12
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10792..11247)
DNA (456bp) protein (152aa)
hypothetical protein n=2 Tax=Sphingobium xenophagum RepID=UPI0002DB06EC
Uncharacterized protein {ECO:0000313|EMBL:AHE51968.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
DoxX family protein; K15977 putative oxidoreductase
SCNpilot_expt_500_bf_scaffold_5202_13
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11296..11574)
DNA (279bp) protein (93aa)
UPI0003D66B0C related cluster n=1 Tax=unknown RepID=UPI0003D66B0C
Membrane protein {ECO:0000313|EMBL:ETI65669.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5202_14
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11719..12258
DNA (540bp) protein (180aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Sphingobium sp. AP49 RepID=J2DDT2_9SPHN
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJK80937.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_5202_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12255..12896
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DC12_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU76372.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5202_16
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12980..13243
DNA (264bp) protein (88aa)
UPI0003D5BBAF related cluster n=1 Tax=unknown RepID=UPI0003D5BBAF
Uncharacterized protein {ECO:0000313|EMBL:ETI65672.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5202_17
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13303..14133
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002EEDFCE rbh
UPF0276 protein PMI04_03162 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein; K09930 hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_5202_18
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14130..14897
DNA (768bp) protein (256aa)
UPI0003D64F6B related cluster n=1 Tax=unknown RepID=UPI0003D64F6B
Uncharacterized protein {ECO:0000313|EMBL:AHE51974.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5202_19
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15188..15631
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YAQ2_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH88812.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_500_bf_scaffold_5202_20
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15848..16405
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000381C587
Electron transport transmembrane protein Sco1/SenC/PrrC {ECO:0000313|EMBL:GAN77398.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
electron transport protein SCO1/SenC; K07152
SCNpilot_expt_500_bf_scaffold_5202_21
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16412..17452)
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003693AD0 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN77396.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5202_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

17522..18562
DNA (1041bp) protein (347aa)
Putative inner membrane protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGP6_9SPHN
putative inner membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
SCNpilot_expt_500_bf_scaffold_5202_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18958..20427)
DNA (1470bp) protein (490aa)
Alpha,alpha-trehalase (EC:3.2.1.28); K01194 alpha,alpha-trehalase [EC:3.2.1.28] rbh
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037016BE rbh
Trehalase {ECO:0000313|EMBL:AIT05618.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_5202_24
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20424..21590)
DNA (1167bp) protein (389aa)
Major facilitator superfamily transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPJ1_9SPHN
fucose permease
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_expt_500_bf_scaffold_5202_25
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21590..22648)
DNA (1059bp) protein (353aa)
Alpha/beta hydrolase fold family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X3B1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE53112.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
alpha/beta hydrolase domain-containing protein
SCNpilot_expt_500_bf_scaffold_5202_26
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22645..24087)
DNA (1443bp) protein (481aa)
Alpha/beta hydrolase n=1 Tax=mine drainage metagenome RepID=E6Q0E6_9ZZZZ
Alpha/beta hydrolase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_5202_27
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24084..24803)
DNA (720bp) protein (240aa)
beta-glucosidase (EC:3.2.1.21); K05350 beta-glucosidase [EC:3.2.1.21]
Glycosyl hydrolase family 1 n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WES7_9CAUL
Glycosyl hydrolase family 1 {ECO:0000313|EMBL:EDX80585.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
SCNpilot_expt_500_bf_scaffold_5202_28
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24805..26145)
DNA (1341bp) protein (447aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WES9_9CAUL rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EDX82142.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5202_29
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26145..28649)
DNA (2505bp) protein (835aa)
TonB-dependent Receptor Plug domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X3B3_9SPHN rbh
DNA, contig: SP664 {ECO:0000313|EMBL:GAN15748.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_5202_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28849..29640
DNA (792bp) protein (264aa)
LacI family transcription regulator n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9C4F rbh
Transcriptional regulator of maltose utilization of lacI family {ECO:0000313|EMBL:GAO56471.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
periplasmic-binding protein/LacI transcriptional regulator
Displaying 30 items

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