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SCNpilot_expt_500_bf_scaffold_5393

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5393_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..666)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035F1C48
DNA, contig: SP658 {ECO:0000313|EMBL:GAN15481.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
glucose/sorbosone dehydrogenase-like protein
SCNpilot_expt_500_bf_scaffold_5393_2
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1605..1886)
DNA (282bp) protein (94aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
rRNA maturation factor n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7418F
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5393_3
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2094..2552)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V659_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ67775.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_5393_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2549..3034)
DNA (486bp) protein (162aa)
phosphate starvation-inducible phoH n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5B80D
PhoH-like family protein {ECO:0000313|EMBL:EZP52632.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
PhoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
SCNpilot_expt_500_bf_scaffold_5393_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3606..4796)
DNA (1191bp) protein (397aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimo
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5CE0B
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_expt_500_bf_scaffold_5393_6
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5619..6041)
DNA (423bp) protein (141aa)
Fur family transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B392C3
Ferric uptake regulator family protein {ECO:0000313|EMBL:EZP52629.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
fur; ferric uptake regulation protein; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_expt_500_bf_scaffold_5393_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6112..7989)
DNA (1878bp) protein (626aa)
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide peptidase {ECO:0000256|PIRNR:PIRNR001217}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
sppA; protease IV (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003774F5A rbh
SCNpilot_expt_500_bf_scaffold_5393_8
bacterium YEK0313, Bacteria

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comp(8023..8499)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000379FD5D
Glutathione S-transferase GST-6.0 {ECO:0000313|EMBL:CEJ11482.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
gst3; Glutathione S-transferase domain protein
SCNpilot_expt_500_bf_scaffold_5393_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8665..9267)
DNA (603bp) protein (201aa)
isoquinoline 1-oxidoreductase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B62ECF
Isoquinoline 1-oxidoreductase {ECO:0000313|EMBL:AIT05719.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
isoquinoline 1-oxidoreductase (alpha subunit)oxidoreductase protein
SCNpilot_expt_500_bf_scaffold_5393_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9362..10657
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003825BA1 rbh
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29668.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
glucose/galactose transporter rbh
SCNpilot_expt_500_bf_scaffold_5393_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10662..11783)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000378D445 rbh
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29667.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5393_12
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11940..13364
DNA (1425bp) protein (475aa)
amidohydrolase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035CFEAE rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO39023.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
amidohydrolase rbh
SCNpilot_expt_500_bf_scaffold_5393_13
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13361..13951
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035DEBEF
amidohydrolase 3
Amidohydrolase 3 {ECO:0000313|EMBL:ABQ66453.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Displaying 13 items

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