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SCNpilot_expt_500_bf_scaffold_5466

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5466_1
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..333)
DNA (333bp) protein (111aa)
sulfonate ABC transporter permease n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB957
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABQ66641.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_5466_2
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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737..1303
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030BE34A
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32059.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCNpilot_expt_500_bf_scaffold_5466_3
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1303..1686
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WJ61_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ80316.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5466_4
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1753..2349
DNA (597bp) protein (199aa)
uracil-DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IIM2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB11590.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_expt_500_bf_scaffold_5466_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2353..2844)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037CFCB4
Uncharacterized protein {ECO:0000313|EMBL:EJW11152.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5466_6
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2861..4111)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G5Q3_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA99030.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
manganese/iron transporter, NRAMP family
SCNpilot_expt_500_bf_scaffold_5466_7
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4199..4582)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RWF0_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48025.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_5466_8
Brucella sp. 83/13, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4674..5171
DNA (498bp) protein (166aa)
transposase IS4 n=1 Tax=Sphingomonas wittichii RepID=UPI00035ED594
Transposase {ECO:0000313|EMBL:EEZ33761.1}; Flags: Fragment;; TaxID=520449 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. 83/13.;"
transposase, IS4
SCNpilot_expt_500_bf_scaffold_5466_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5244..5627
DNA (384bp) protein (128aa)
UPI0003D632DB related cluster n=1 Tax=unknown RepID=UPI0003D632DB
Uncharacterized protein {ECO:0000313|EMBL:AKH43040.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_500_bf_scaffold_5466_10
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5624..5779
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T8K2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT70063.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
SCNpilot_expt_500_bf_scaffold_5466_11
unknown

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comp(6130..6417)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B48208
Displaying 11 items

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