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SCNpilot_expt_500_bf_scaffold_5508

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5508_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(173..1300)
DNA (1128bp) protein (376aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003747500 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AIT05900.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
acyl-CoA dehydrogenase-like protein rbh
SCNpilot_expt_500_bf_scaffold_5508_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1361..2548)
DNA (1188bp) protein (396aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003709B8B rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJP71897.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_5508_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2548..3867)
DNA (1320bp) protein (440aa)
amidase family protein; K01426 amidase [EC:3.5.1.4] rbh
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036B41B0 rbh
Sphingomonas taxi strain 30a NODE_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29188.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_5508_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3922..4086)
DNA (165bp) protein (55aa)
3-hydroxyacyl-CoA dehydrogenase; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C977F
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KHA65546.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_5508_5
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

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4982..5605
DNA (624bp) protein (208aa)
id=12551845 bin=BDI tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCNpilot_expt_500_bf_scaffold_5508_6
unknown

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5690..5992
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5508_7
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5974..7197)
DNA (1224bp) protein (408aa)
beta-lactamase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037CE75A rbh
Beta-lactamase {ECO:0000313|EMBL:KHA65575.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
beta-lactamase
SCNpilot_expt_500_bf_scaffold_5508_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7313..9052
DNA (1740bp) protein (580aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036B86DB rbh
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:ENY81323.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
AMP-dependent synthetase/ligase rbh
SCNpilot_expt_500_bf_scaffold_5508_9
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9128..9793
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036CA69C
crp; Crp/Fnr-family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_expt_500_bf_scaffold_5508_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9845..11092
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037BFAF1 rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP57521.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
putative permease
SCNpilot_expt_500_bf_scaffold_5508_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11181..11327)
DNA (147bp) protein (49aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B76F13
DNA, contig: SP653 {ECO:0000313|EMBL:GAN15240.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_5508_12
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11582..11794
DNA (213bp) protein (71aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
tig; trigger factor (EC:5.2.1.8)
Trigger factor n=1 Tax=Sphingomonas sp. S17 RepID=F3WXI9_9SPHN
Displaying 12 items

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