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SCNpilot_expt_500_bf_scaffold_3266

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3266_1
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1305)
DNA (1305bp) protein (435aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S3L5_9SPHN rbh
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAO38912.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_3266_2
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1614..1784)
DNA (171bp) protein (57aa)
Fumarylacetoacetate hydrolase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q539_9RHIZ
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:EKF58809.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
fumarylacetoacetate hydrolase
SCNpilot_expt_500_bf_scaffold_3266_3
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1781..2254)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DUL3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU81015.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3266_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2324..2893)
DNA (570bp) protein (190aa)
IclR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9US56_9SPHN
IclR family transcriptional regulator {ECO:0000313|EMBL:ENY81285.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
IclR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3266_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3121..4053
DNA (933bp) protein (311aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G903_NOVAD rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:GAO54016.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_500_bf_scaffold_3266_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4064..5245
DNA (1182bp) protein (394aa)
acyl-CoA dehydrogenase (EC:1.3.99.-); K06446 acyl-CoA dehydrogenase [EC:1.3.99.-] rbh
Acyl-CoA dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1E6_9SPHN
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ENY81287.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_3266_7
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5252..6451
DNA (1200bp) protein (400aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WC22_9SPHN
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ETR76379.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
L-carnitine dehydratase/bile acid-inducible protein F; K14470 mesaconyl-CoA C1-C4 CoA transferase
SCNpilot_expt_500_bf_scaffold_3266_8
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6280..7218)
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A341_RHIET
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_expt_500_bf_scaffold_3266_9
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7307..7642
DNA (336bp) protein (112aa)
acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USJ8_9SPHN
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ETR76378.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_500_bf_scaffold_3266_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7662..8513
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFE4_NOVAD rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO54021.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein; K09709 mesaconyl-C4 CoA hydratase rbh
SCNpilot_expt_500_bf_scaffold_3266_11
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8517..9116)
DNA (600bp) protein (200aa)
membrane protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488ED8
putative transmembrane protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_expt_500_bf_scaffold_3266_12
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9144..10325)
DNA (1182bp) protein (394aa)
Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMD0_CAUST rbh
response regulator receiver sensor signal transduction histidine kinase rbh
Response regulator receiver sensor signal transduction histidine kinase {ECO:0000313|EMBL:ADG11653.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_500_bf_scaffold_3266_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10322..10897)
DNA (576bp) protein (192aa)
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7C6_SINAD
chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain {ECO:0000313|EMBL:AGA24733.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCNpilot_expt_500_bf_scaffold_3266_14
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10894..11718)
DNA (825bp) protein (275aa)
MCP methyltransferase (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80] rbh
Chemotaxis methyltransferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8W0J5_9SPHN rbh
Chemotaxis methyltransferase {ECO:0000313|EMBL:EJU13793.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_expt_500_bf_scaffold_3266_15
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11730..14654)
DNA (2925bp) protein (975aa)
PREDICTED: uncharacterized protein LOC102335476 n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17379 rbh
Scaffold13, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31214.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
multi-sensor hybrid histidine kinase rbh
SCNpilot_expt_500_bf_scaffold_3266_16
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14654..15142)
DNA (489bp) protein (163aa)
PREDICTED: uncharacterized protein LOC102335476 n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17379
multi-sensor hybrid histidine kinase
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:ADG11650.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_500_bf_scaffold_3266_17
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15252..15884)
DNA (633bp) protein (211aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC26056.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
SCNpilot_expt_500_bf_scaffold_3266_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16724..17299)
DNA (576bp) protein (192aa)
MFS transporter n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KEP7_9SPHN
Alpha-ketoglutarate permease {ECO:0000313|EMBL:AJP72596.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
alpha-ketoglutarate permease
SCNpilot_expt_500_bf_scaffold_3266_19
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17256..17993)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MFZ7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW15891.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
kgtP; MFS transporter; K03761 MFS transporter, MHS family, alpha-ketoglutarate permease
SCNpilot_expt_500_bf_scaffold_3266_20
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18066..20288)
DNA (2223bp) protein (741aa)
atsA; arylsulfatase; K01130 arylsulfatase [EC:3.1.6.1] rbh
Arylsulfatase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RE92_PHEZH rbh
Arylsulfatase {ECO:0000313|EMBL:ACG76834.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_500_bf_scaffold_3266_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20435..21082
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000366D77C rbh
DNA, contig: SP636 {ECO:0000313|EMBL:GAN14316.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_3266_22
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21252..21563
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000380CB85
Uncharacterized protein {ECO:0000313|EMBL:GAM01298.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3266_23
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21655..22374
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036B126C rbh
DNA, contig: SP636 {ECO:0000313|EMBL:GAN14314.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3266_24
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22382..23524)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQI3_TISMK rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA11755.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3266_25
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23548..24081)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HSH4_9SPHN
TonB-dependent Receptor Plug domain protein {ECO:0000313|EMBL:AJA11754.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_3266_26
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24123..26402)
DNA (2280bp) protein (760aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HSH4_9SPHN
TonB-dependent Receptor Plug domain protein {ECO:0000313|EMBL:AJA11754.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_3266_27
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26561..27154
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=1 Tax=Caulobacter crescentus OR37 RepID=R0CVY9_CAUCE
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ENZ80666.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
putative TetR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3266_28
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27193..28533
DNA (1341bp) protein (447aa)
hippurate hydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32] rbh
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030C6AAE rbh
Hippurate hydrolase {ECO:0000313|EMBL:EHJ59703.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_500_bf_scaffold_3266_29
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29443..30153
DNA (711bp) protein (237aa)
Fic/DOC family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0J0_BREDI
Fic/DOC family protein {ECO:0000313|EMBL:EGF94119.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
filamentation induced by cAMP protein Fic
SCNpilot_expt_500_bf_scaffold_3266_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30201..30731)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248868B rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY82845.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Displaying items 1-30 of 35 in total

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