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SCNpilot_expt_500_bf_scaffold_3353

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3353_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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89..643
DNA (555bp) protein (185aa)
colicin V production protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB15C
DNA, contig: SP614 {ECO:0000313|EMBL:GAN12955.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
colicin V production protein; K03558 membrane protein required for colicin V production
SCNpilot_expt_500_bf_scaffold_3353_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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640..1068
DNA (429bp) protein (143aa)
nitrogen-fixing protein NifU n=1 Tax=Sphingomonas echinoides RepID=UPI00026CAB52
Nitrogen-fixing protein NifU {ECO:0000313|EMBL:KHA64746.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
NifU-like protein
SCNpilot_expt_500_bf_scaffold_3353_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1065..2831
DNA (1767bp) protein (589aa)
sodium/hydrogen exchanger n=1 Tax=Sphingomonas melonis RepID=UPI00037502CE rbh
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29479.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family rbh
SCNpilot_expt_500_bf_scaffold_3353_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3181..3513
DNA (333bp) protein (111aa)
membrane protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4D6FD
Membrane protein {ECO:0000313|EMBL:AIT05328.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3353_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3515..4609)
DNA (1095bp) protein (365aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
3-dehydroquinate synthase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3E4C1 rbh
SCNpilot_expt_500_bf_scaffold_3353_6
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4606..5187)
DNA (582bp) protein (194aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71]
shikimate kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5DE5D
SCNpilot_expt_500_bf_scaffold_3353_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5230..5367
DNA (138bp) protein (46aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WSN3_9SPHN
DNA, contig: SP614 {ECO:0000313|EMBL:GAN13073.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_3353_8
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5348..7129
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000364B0FE rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP56750.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3353_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7490..7984
DNA (495bp) protein (165aa)
tyrosine recombinase XerD n=1 Tax=Sphingomonas melonis RepID=UPI00036DEA68
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
phage integrase family protein; K04763 integrase/recombinase XerD
SCNpilot_expt_500_bf_scaffold_3353_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8412..8903
DNA (492bp) protein (164aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomon
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
acetyl-CoA carboxylase subunit alpha n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B57CD4
SCNpilot_expt_500_bf_scaffold_3353_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8983..9726)
DNA (744bp) protein (248aa)
alpha/beta hydrolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B37431
DNA, contig: SP611 {ECO:0000313|EMBL:GAN12537.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
alpha/beta hydrolase
SCNpilot_expt_500_bf_scaffold_3353_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9825..10619
DNA (795bp) protein (265aa)
class V aminotransferase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037CF918
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29688.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_3353_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10837..11541
DNA (705bp) protein (235aa)
class V aminotransferase; K04487 cysteine desulfurase [EC:2.8.1.7]
aminotransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B64288
Uncharacterized protein {ECO:0000313|EMBL:AHE52732.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_500_bf_scaffold_3353_14
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11861..12148
DNA (288bp) protein (96aa)
Ferredoxin n=2 Tax=Sphingomonas wittichii RepID=A5V2B0_SPHWW
ferredoxin
Ferredoxin {ECO:0000313|EMBL:ABQ66426.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_3353_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12825..14453
DNA (1629bp) protein (543aa)
DNA polymerase III subunit gamma/tau n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B676BA rbh
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29676.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA polymerase III subunits gamma and tau rbh
SCNpilot_expt_500_bf_scaffold_3353_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14450..14773
DNA (324bp) protein (108aa)
DNA-binding protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003614680
Nucleoid-associated protein NX02_04975 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein; K09747 hypothetical protein
SCNpilot_expt_500_bf_scaffold_3353_17
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14830..15156)
DNA (327bp) protein (109aa)
UPI0003CFB02A related cluster n=1 Tax=unknown RepID=UPI0003CFB02A
Uncharacterized protein {ECO:0000313|EMBL:ESZ85838.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
hypothetical protein
Displaying 17 items

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