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SCNpilot_expt_500_bf_scaffold_3431

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3431_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1467)
DNA (1467bp) protein (489aa)
ggt; gamma-glutamyltranspeptidase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] rbh
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:BAK64832.1}; EC=2.3.2.2 {ECO:0000313|EMBL:BAK64832.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
gamma-glutamyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B798FB rbh
SCNpilot_expt_500_bf_scaffold_3431_2
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1652..3391
DNA (1740bp) protein (580aa)
AMP-dependent synthetase n=1 Tax=Sphingomonas melonis RepID=UPI000361C3DB rbh
AMP-binding enzyme family protein {ECO:0000313|EMBL:EZP52622.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
AMP-dependent synthetase/ligase rbh
SCNpilot_expt_500_bf_scaffold_3431_3
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3395..6316)
DNA (2922bp) protein (974aa)
pqqL; putative Zn-dependent peptidase; K07263 zinc protease [EC:3.4.24.-] rbh
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037FA2FA rbh
DNA, contig: SP658 {ECO:0000313|EMBL:GAN15467.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_3431_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6543..7370
DNA (828bp) protein (276aa)
aspartyl/asparaginyl beta-hydroxylase; K12979 beta-hydroxylase [EC:1.14.11.-]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037589A1 rbh
Aspartyl beta-hydroxylase {ECO:0000313|EMBL:KHA63695.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_3431_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7419..8000
DNA (582bp) protein (194aa)
iron transporter n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003742953 rbh
Iron transporter {ECO:0000313|EMBL:AIT08082.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
Scaffold protein Nfu/NifU
SCNpilot_expt_500_bf_scaffold_3431_6
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8013..8990)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S5Q1_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH51071.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_3431_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9107..9916
DNA (810bp) protein (270aa)
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53]
N-carbamoylputrescine amidase n=1 Tax=Sphingomonas sp. S17 RepID=F3WU38_9SPHN
AguB protein {ECO:0000313|EMBL:GAN13471.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_3431_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9978..10442
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYG3_9SPHN
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12251.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3431_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10415..10951
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5C35C
Sphingomonas taxi strain 30a NODE_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27147.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
conserved membrane protein of unknown function
SCNpilot_expt_500_bf_scaffold_3431_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11107..11802
DNA (696bp) protein (232aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B59E2C rbh
Sphingomonas taxi strain 30a NODE_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27154.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA-binding response regulator CtrA; K13584 two-component system, cell cycle response regulator CtrA
SCNpilot_expt_500_bf_scaffold_3431_11
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11933..12712
DNA (780bp) protein (260aa)
(S)-acetoin forming diacetyl reductase {ECO:0000313|EMBL:ESS60240.1}; EC=1.1.1.304 {ECO:0000313|EMBL:ESS60240.1};; TaxID=1399146 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae S611.;"
acetoin reductase family protein; K03366 (R,R)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.303] rbh
(S)-acetoin forming diacetyl reductase n=1 Tax=Enterobacter cloacae S611 RepID=V5AHZ1_ENTCL rbh
SCNpilot_expt_500_bf_scaffold_3431_12
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12703..14313)
DNA (1611bp) protein (537aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C79FB rbh
Amidohydrolase family protein {ECO:0000313|EMBL:EZP53517.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
amidohydrolase 3; K07047
SCNpilot_expt_500_bf_scaffold_3431_13
unknown

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14729..15073
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3431_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15241..16422
DNA (1182bp) protein (394aa)
threonine dehydratase (EC:4.3.1.19)
Threonine dehydratase n=1 Tax=Sphingomonas sp. S17 RepID=F3WV90_9SPHN
DNA, contig: SP610 {ECO:0000313|EMBL:GAN12433.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_3431_15
unknown

Not on your lists

comp(16353..16541)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3431_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16568..17266
DNA (699bp) protein (233aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
putative arginyl-tRNA/protein arginylyltransferase (EC:2.3.2.8); K00685 arginine-tRNA-protein transferase [EC:2.3.2.8]
arginyl-tRNA-protein transferase n=1 Tax=Sphingomonas melonis RepID=UPI00036A080D
SCNpilot_expt_500_bf_scaffold_3431_17
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17263..18606)
DNA (1344bp) protein (448aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037E28C6
DNA, contig: SP610 {ECO:0000313|EMBL:GAN12428.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
thiol-disulfide interchange protein
SCNpilot_expt_500_bf_scaffold_3431_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19288..20907
DNA (1620bp) protein (540aa)
Alkaline phosphatase {ECO:0000256|PIRNR:PIRNR031924}; EC=3.1.3.1 {ECO:0000256|PIRNR:PIRNR031924};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381161B rbh
alkaline phosphatase
SCNpilot_expt_500_bf_scaffold_3431_19
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20918..23500)
DNA (2583bp) protein (861aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037E4A1E rbh
Uncharacterized protein {ECO:0000313|EMBL:ESQ85702.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
sensor histidine kinase/response regulator rbh
SCNpilot_expt_500_bf_scaffold_3431_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23807..25861
DNA (2055bp) protein (685aa)
NadE protein {ECO:0000313|EMBL:KIU28606.1}; EC=6.3.5.1 {ECO:0000313|EMBL:KIU28606.1};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
nadE; NAD synthetase (EC:6.3.1.5); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
NAD synthetase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3CAD0 rbh
Displaying 20 items

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