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SCNpilot_expt_500_bf_scaffold_3514

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3514_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(169..765)
DNA (597bp) protein (199aa)
Ankyrin repeat family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X264_9SPHN
DNA, contig: SP628 {ECO:0000313|EMBL:GAN13809.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ankyrin
SCNpilot_expt_500_bf_scaffold_3514_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

830..1408
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000361AD1A
Electron transporter {ECO:0000313|EMBL:KHA64975.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
electron transport protein SCO1/SenC; K07152
SCNpilot_expt_500_bf_scaffold_3514_3
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1592..1798
DNA (207bp) protein (69aa)
Uncharacterized family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X262_9SPHN
DNA, contig: SP628 {ECO:0000313|EMBL:GAN13807.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3514_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2039..2416
DNA (378bp) protein (126aa)
metal-dependent hydrolase n=1 Tax=Sphingomonas elodea RepID=UPI0002631626
Metal-dependent hydrolase {ECO:0000313|EMBL:KHA64973.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein; K07043
SCNpilot_expt_500_bf_scaffold_3514_5
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2386..4539)
DNA (2154bp) protein (718aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036A8132 rbh
Penicillin-binding , 1A family protein {ECO:0000313|EMBL:EZP49225.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
penicillin-binding protein rbh
SCNpilot_expt_500_bf_scaffold_3514_6
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4615..5010)
DNA (396bp) protein (132aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
methionine sulfoxide reductase B n=1 Tax=Sphingomonas elodea RepID=UPI0002631628
methionine-R-sulfoxide reductase
SCNpilot_expt_500_bf_scaffold_3514_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5081..5605)
DNA (525bp) protein (175aa)
pathogenesis-like protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B40952
pathogenesis-like protein
Pathogenesis-related protein {ECO:0000313|EMBL:BAK66195.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_500_bf_scaffold_3514_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5685..6260)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002888D98
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66196.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_500_bf_scaffold_3514_9
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6334..6957)
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002896FFE
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_500_bf_scaffold_3514_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7415..8107)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000371420B
Family finger-like domain protein {ECO:0000313|EMBL:EZP49233.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3514_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8227..8973
DNA (747bp) protein (249aa)
cell division ATP-binding protein FtsE (EC:3.6.3.31); K09812 cell division transport system ATP-binding protein rbh
cell division protein FtsE n=1 Tax=Sphingomonas melonis RepID=UPI00036133E2 rbh
Sphingomonas taxi strain 30a NODE_76, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26459.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_3514_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8977..9852
DNA (876bp) protein (292aa)
permease n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD038 rbh
Sphingomonas taxi strain 30a NODE_76, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26458.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ftsX; cell division protein; K09811 cell division transport system permease protein
SCNpilot_expt_500_bf_scaffold_3514_13
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9849..10382
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X254_9SPHN
DNA, contig: SP628 {ECO:0000313|EMBL:GAN13799.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3514_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10396..11124
DNA (729bp) protein (243aa)
glycerol acyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5A505 rbh
Sphingomonas taxi strain 30a NODE_76, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26456.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
phospholipid/glycerol acyltransferase
SCNpilot_expt_500_bf_scaffold_3514_15
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11076..11984)
DNA (909bp) protein (303aa)
cyclohexadienyl dehydrogenase (EC:1.3.1.12); K00220 cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
Prephenate dehydrogenase {ECO:0000313|EMBL:ABQ69358.1}; EC=1.3.1.12 {ECO:0000313|EMBL:ABQ69358.1};; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
cyclohexadienyl dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003745F15 rbh
SCNpilot_expt_500_bf_scaffold_3514_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11984..13084)
DNA (1101bp) protein (367aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] rbh
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036E7E3E rbh
SCNpilot_expt_500_bf_scaffold_3514_17
R_WOR_2_52_10, WOR-2, Bacteria

Not on your lists

comp(13274..13534)
DNA (261bp) protein (87aa)
Tax=RIFCSPHIGHO2_01_FULL_WOR_2_52_10_curated
SCNpilot_expt_500_bf_scaffold_3514_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13766..14278
DNA (513bp) protein (171aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
metX; homoserine O-acetyltransferase (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31]
homoserine O-acetyltransferase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028A1D68
SCNpilot_expt_500_bf_scaffold_3514_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14275..14883
DNA (609bp) protein (203aa)
methionine biosynthesis protein MetW n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288D4EB rbh
SAM-dependent methyltransferase {ECO:0000313|EMBL:AIT07348.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
metW; SAM-dependent methyltransferase rbh
SCNpilot_expt_500_bf_scaffold_3514_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14910..15302
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003622626
Transcriptional regulator {ECO:0000313|EMBL:AIT08267.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
CheY-like response regulator
SCNpilot_expt_500_bf_scaffold_3514_21
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15286..16800)
DNA (1515bp) protein (505aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036667B5 rbh
Histidine kinase {ECO:0000313|EMBL:KHA64734.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
signal transduction histidine kinase rbh
SCNpilot_expt_500_bf_scaffold_3514_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16810..17367)
DNA (558bp) protein (186aa)
single-stranded DNA-binding protein n=1 Tax=Sphingomonas melonis RepID=UPI0003647AF9 rbh
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
single-strand DNA-binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_500_bf_scaffold_3514_23
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17377..19230)
DNA (1854bp) protein (618aa)
iron transporter FeoB n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCAD2 rbh
Iron transporter FeoB {ECO:0000313|EMBL:KHA64139.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
ferrous iron transport protein B; K04759 ferrous iron transport protein B
SCNpilot_expt_500_bf_scaffold_3514_24
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19230..19481)
DNA (252bp) protein (84aa)
iron transporter FeoA n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCAD1
Ferrous iron transport protein A {ECO:0000313|EMBL:GAM01457.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
FeoA family protein
SCNpilot_expt_500_bf_scaffold_3514_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19535..20203)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036DC518 rbh
Sphingomonas taxi strain 30a NODE_31, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26494.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
putative ubiquinone biosynthesis protein
SCNpilot_expt_500_bf_scaffold_3514_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20200..21090)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000365A4AF
Permease {ECO:0000313|EMBL:AJP73549.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3514_27
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21153..22229
DNA (1077bp) protein (359aa)
12-oxophytodienoate reductase (EC:1.3.1.42) rbh
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003783429 rbh
N-ethylmaleimide reductase {ECO:0000313|EMBL:AIT07342.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_3514_28
unknown

Not on your lists

comp(22270..22686)
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3514_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22694..23113)
DNA (420bp) protein (140aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Sphingomonas melonis RepID=UPI0003762A99
ribH; 6,7-dimethyl-8-ribityllumazine synthase
SCNpilot_expt_500_bf_scaffold_3514_30
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23139..23777)
DNA (639bp) protein (213aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288D46E
3,4-dihydroxy-2-butanone-4-phosphate synthase {ECO:0000313|EMBL:GAO40026.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase
Displaying 30 items

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