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SCNpilot_expt_500_bf_scaffold_3979

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3979_1
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..414)
DNA (414bp) protein (138aa)
chitinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B62042
Chitinase {ECO:0000313|EMBL:KHA63535.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3979_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(411..956)
DNA (546bp) protein (182aa)
ubiquinol-cytochrome C chaperone n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5BB56
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26392.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3979_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1046..1513
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000369B6AE
SmpA / OmlA family protein {ECO:0000313|EMBL:EZP51007.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SmpA/OmlA domain-containing protein
SCNpilot_expt_500_bf_scaffold_3979_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1634..2131
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F1678
Membrane protein {ECO:0000313|EMBL:AJP73474.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3979_5
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2181..2594)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HTQ1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB00884.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
GreA/GreB family elongation factor; K06140 regulator of nucleoside diphosphate kinase
SCNpilot_expt_500_bf_scaffold_3979_6
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2800..3246)
DNA (447bp) protein (149aa)
AsnC family transcriptional regulator n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JNP8_9RHIZ
HTH-type transcriptional regulator y4sM
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_3979_7
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3367..4482
DNA (1116bp) protein (372aa)
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1]
alanine racemase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A45C
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_3979_8
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4479..5732
DNA (1254bp) protein (418aa)
D-amino acid dehydrogenase small subunit (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino acid dehydrogenase small subunit n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A45B
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_3979_9
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5938..6627
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00030FF050 rbh
amidohydrolase rbh
Amidohydrolase {ECO:0000313|EMBL:ABQ69233.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_3979_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6611..7192
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003655565
Hydrolase {ECO:0000313|EMBL:AHX12585.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
amidohydrolase
SCNpilot_expt_500_bf_scaffold_3979_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7528..8244
DNA (717bp) protein (239aa)
peptidase M19 family protein; K01273 membrane dipeptidase [EC:3.4.13.19]
peptidase M19 n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000375E779
Peptidase M19 family protein {ECO:0000313|EMBL:BAK65069.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_500_bf_scaffold_3979_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8249..9187
DNA (939bp) protein (313aa)
ocd; ornithine cyclodeaminase; K01750 ornithine cyclodeaminase [EC:4.3.1.12] rbh
Ornithine cyclodeaminase {ECO:0000313|EMBL:BAK65068.1}; EC=4.3.1.12 {ECO:0000313|EMBL:BAK65068.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036C7048 rbh
SCNpilot_expt_500_bf_scaffold_3979_13
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9203..9880
DNA (678bp) protein (226aa)
Transcriptional regulator n=2 Tax=Sphingomonadaceae RepID=T0HL22_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:KEQ55623.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
two component transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3979_14
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9877..10917
DNA (1041bp) protein (347aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
Two-component hybrid sensor and regulator n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MUP7_9SPHN rbh
two-component system sensor histidine kinase rbh
SCNpilot_expt_500_bf_scaffold_3979_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11008..11592
DNA (585bp) protein (195aa)
RND transporter n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C161
RND transporter {ECO:0000313|EMBL:KFD27701.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
RND family efflux transporter MFP subunit
Displaying 15 items

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