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SCNpilot_expt_500_bf_scaffold_10210

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_10210_1
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..445)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028911F0
putative MASP
MASP {ECO:0000313|EMBL:EPR17306.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_expt_500_bf_scaffold_10210_2
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(513..1871)
DNA (1359bp) protein (453aa)
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
DNA ligase, ATP-dependent, PP_1105 family n=1 Tax=Novosphingobium sp. AP12 RepID=J3AKF0_9SPHN rbh
DNA ligase, ATP-dependent, PP_1105 family {ECO:0000313|EMBL:EJL33166.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_500_bf_scaffold_10210_3
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1868..2098)
DNA (231bp) protein (77aa)
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1]
DNA ligase, ATP-dependent, putative n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N6G6_ERYLH
DNA ligase, ATP-dependent, family {ECO:0000313|EMBL:EZP82043.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_500_bf_scaffold_10210_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2100..3101)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VGQ6_9SPHN rbh
mRNA 3-end processing factor {ECO:0000313|EMBL:GAO54292.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein; K07577 putative mRNA 3-end processing factor rbh
SCNpilot_expt_500_bf_scaffold_10210_5
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3375..4457
DNA (1083bp) protein (361aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2CSJ8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP55979.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_500_bf_scaffold_10210_6
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4454..7363)
DNA (2910bp) protein (970aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI000381F1AC rbh
TolB protein, periplasmic protein involved in the tonb-independent uptake of group A colicins {ECO:0000313|EMBL:CEL23108.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_10210_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7433..8557)
DNA (1125bp) protein (375aa)
TonB-dependent Receptor Plug domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZ17_9SPHN
DNA, contig: SP661 {ECO:0000313|EMBL:GAN15574.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
TonB-dependent receptor
Displaying 7 items

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