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SCNpilot_expt_500_bf_scaffold_10232

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_10232_1
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1069)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HEP5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA97844.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_10232_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1222..1917)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035EAD4C
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29495.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
anti-sigma factor
SCNpilot_expt_500_bf_scaffold_10232_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1921..2400)
DNA (480bp) protein (160aa)
RNA polymerase sigma70 n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B41E89
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29496.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_10232_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2480..3481
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037321C2 rbh
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29497.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
subtilisin-like serine protease
SCNpilot_expt_500_bf_scaffold_10232_5
unknown

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comp(3468..3743)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_10232_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3861..4631
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3F2CE
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29498.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_10232_7
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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4856..6937
DNA (2082bp) protein (694aa)
TonB-dependent receptor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEP9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAM98241.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_10232_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6948..8348
DNA (1401bp) protein (467aa)
FAD linked oxidase domain-containing protein; K00102 D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] rbh
2-hydroxy-acid oxidase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCA72 rbh
Lactate dehydrogenase {ECO:0000313|EMBL:AIT08358.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_10232_9
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8422..8952
DNA (531bp) protein (177aa)
Major facilitator transporter n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEQ2_9SPHN
major facilitator transporter
Major facilitator transporter {ECO:0000313|EMBL:CCA90777.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_500_bf_scaffold_10232_10
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9066..9668
DNA (603bp) protein (201aa)
Major facilitator transporter n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEQ2_9SPHN
major facilitator transporter
Major facilitator transporter {ECO:0000313|EMBL:CCA90777.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_500_bf_scaffold_10232_11
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9665..10573
DNA (909bp) protein (303aa)
ROK family protein; K00847 fructokinase [EC:2.7.1.4] rbh
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI000368B172 rbh
Fructokinase {ECO:0000313|EMBL:KHA63470.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_10232_12
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10570..11406
DNA (837bp) protein (279aa)
mannitol dehydrogenase; K00045 mannitol 2-dehydrogenase [EC:1.1.1.67]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00031B783E
MtlD protein {ECO:0000313|EMBL:BAQ47331.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
Displaying 12 items

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