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SCNpilot_expt_500_bf_scaffold_4794

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4794_1
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..235
DNA (234bp) protein (78aa)
aldehyde-activating protein n=1 Tax=Methyloferula stellata RepID=UPI00036BC1FA
Aldehyde-activating protein {ECO:0000313|EMBL:AJR24473.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_500_bf_scaffold_4794_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

291..734
DNA (444bp) protein (148aa)
thioesterase protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD520
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:KHA63605.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_4794_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(746..2359)
DNA (1614bp) protein (538aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000374E89B rbh
Sphingomonas taxi strain 30a NODE_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29025.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4794_4
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2469..3947)
DNA (1479bp) protein (493aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036DCF0F rbh
Protease {ECO:0000313|EMBL:KKC24024.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
protease Do
SCNpilot_expt_500_bf_scaffold_4794_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4058..4933)
DNA (876bp) protein (292aa)
hypothetical protein; K04087 membrane protease subunit HflC [EC:3.4.-.-]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003752607 rbh
Membrane protease subunit HflC {ECO:0000313|EMBL:AIT06375.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_4794_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4930..6009)
DNA (1080bp) protein (360aa)
hflK; HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-]
peptidase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6C49C rbh
HflK protein {ECO:0000313|EMBL:GAN13328.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_4794_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6080..7039
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035DB7AF rbh
Sphingomonas taxi strain 30a NODE_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29029.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ATPase
SCNpilot_expt_500_bf_scaffold_4794_8
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7269..7511
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDC3A
CoA-binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_expt_500_bf_scaffold_4794_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7597..8910
DNA (1314bp) protein (438aa)
C4-dicarboxylate ABC transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031DF3CD rbh
C4-dicarboxylate transport protein {ECO:0000256|HAMAP-Rule:MF_01300}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
sodium:dicarboxylate symporter; K11103 aerobic C4-dicarboxylate transport protein rbh
SCNpilot_expt_500_bf_scaffold_4794_10
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8880..9197)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D56121
Uncharacterized protein {ECO:0000313|EMBL:KHA64839.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
type IV pilus assembly PilZ
SCNpilot_expt_500_bf_scaffold_4794_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9285..10511)
DNA (1227bp) protein (409aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
tyrosyl-tRNA ligase (EC:6.1.1.1) rbh
Tyrosine--tRNA ligase n=1 Tax=Sphingomonas sp. S17 RepID=F3WS96_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_4794_12
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10535..11599)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003784AC7 rbh
Peptidase M23 family protein {ECO:0000313|EMBL:GAL99550.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
peptidase M23B
SCNpilot_expt_500_bf_scaffold_4794_13
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11613..12374)
DNA (762bp) protein (254aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
surE; 5'-nucleotidase (EC:3.1.3.2); K03787 5'-nucleotidase [EC:3.1.3.5]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003669826 rbh
SCNpilot_expt_500_bf_scaffold_4794_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12374..13579)
DNA (1206bp) protein (402aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176, ECO:0000313|EMBL:AJP72004.1}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176, ECO:0000313|EMBL:AJP72004.1};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
seryl-tRNA ligase (EC:6.1.1.11)
seryl-tRNA synthetase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4E6D9
SCNpilot_expt_500_bf_scaffold_4794_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13685..14125
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IST5_9SPHN
Host attachment protein {ECO:0000313|EMBL:AJP72003.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4794_16
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14129..14293)
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035C3971
Uncharacterized protein {ECO:0000313|EMBL:EZP48958.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
Displaying 16 items

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