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SCNpilot_expt_500_bf_scaffold_12268

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_12268_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..213)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPV5_SPHAL
Conjugative transfer protein TrbE {ECO:0000313|EMBL:EZP68905.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_expt_500_bf_scaffold_12268_2
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(210..479)
DNA (270bp) protein (90aa)
Type IV secretory pathway, VirB3-like family protein n=2 Tax=Sphingomonadaceae RepID=F3X045_9SPHN
Conjugal transfer protein {ECO:0000313|EMBL:EQB12126.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
type IV secretory pathway, VirB3 family protein; K03198 type IV secretion system protein VirB3
SCNpilot_expt_500_bf_scaffold_12268_3
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(479..844)
DNA (366bp) protein (122aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPV3_SPHAL
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ABF54319.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_12268_4
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(846..1757)
DNA (912bp) protein (304aa)
Conjugative transfer protein TrbB n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MMJ8_9SPHN
Conjugative transfer protein TrbB {ECO:0000313|EMBL:CCW17974.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_expt_500_bf_scaffold_12268_5
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2196..2828)
DNA (633bp) protein (211aa)
UPI0003D6520C related cluster n=1 Tax=unknown RepID=UPI0003D6520C
Uncharacterized protein {ECO:0000313|EMBL:ETI65815.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
TonB-dependent receptor
Displaying 5 items

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