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SCNpilot_expt_500_bf_scaffold_13563

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_13563_1
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1540
DNA (1539bp) protein (513aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L688_9SPHN
SCNpilot_expt_500_bf_scaffold_13563_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1701..2204
DNA (504bp) protein (168aa)
Translation initiation factor IF-3 n=1 Tax=Sphingomonas sp. S17 RepID=F3WZH8_9SPHN rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
infC; translation initiation factor IF-3
SCNpilot_expt_500_bf_scaffold_13563_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2239..2574)
DNA (336bp) protein (112aa)
polyphenol oxidase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000369292D
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_13563_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2985..3245)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000373E080
DNA, contig: SP622 {ECO:0000313|EMBL:GAN13571.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
putative acetyltransferase
SCNpilot_expt_500_bf_scaffold_13563_5
unknown

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comp(3242..3448)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_13563_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3445..4137)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDB5D
ATP synthase subunit beta {ECO:0000313|EMBL:AJP73920.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_13563_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4088..4438)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003776560
DNA, contig: SP622 {ECO:0000313|EMBL:GAN13570.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_13563_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4435..5316)
DNA (882bp) protein (294aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
prolipoprotein diacylglyceryl transferase (EC:2.4.99.-) rbh
prolipoprotein diacylglyceryl transferase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036B2BEA rbh
SCNpilot_expt_500_bf_scaffold_13563_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5382..6593
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000362C195
AMP-dependent synthetase {ECO:0000313|EMBL:AIT07470.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
AMP-dependent synthetase/ligase
SCNpilot_expt_500_bf_scaffold_13563_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6559..7017
DNA (459bp) protein (153aa)
AMP-dependent synthetase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDB5F
AMP-dependent synthetase {ECO:0000313|EMBL:AIT07470.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
AMP-dependent synthetase/ligase
Displaying 10 items

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