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SCNpilot_expt_500_bf_scaffold_2088

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2088_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..526)
DNA (525bp) protein (175aa)
cysK; cysteine synthase (EC:2.5.1.47); K01738 cysteine synthase A [EC:2.5.1.47]
cysteine synthase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B36603
Sphingomonas taxi strain 30a NODE_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27975.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_2088_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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923..1081
DNA (159bp) protein (53aa)
Uncharacterized protein {ECO:0000313|EMBL:KHA65363.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_2088_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1171..1557
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003740929
Putative lipoprotein {ECO:0000313|EMBL:EZP54681.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2088_4
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1661..2371
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00038096CC rbh
Putative ParA-like protein {ECO:0000313|EMBL:GAM02966.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
Cobyrinic acid ac-diamide synthase
SCNpilot_expt_500_bf_scaffold_2088_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2368..3102
DNA (735bp) protein (245aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6); K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380EC00 rbh
SCNpilot_expt_500_bf_scaffold_2088_6
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2916..3548)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288D7A0
Uncharacterized protein {ECO:0000313|EMBL:EZP54677.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2088_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3523..3915)
DNA (393bp) protein (131aa)
NADH dehydrogenase (EC:1.6.99.3); K00356 NADH dehydrogenase [EC:1.6.99.3]
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYI8_9SPHN
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12275.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_2088_8
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3947..4138)
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC574
Uncharacterized protein {ECO:0000313|EMBL:KHA65241.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_2088_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4412..4975)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035DC5A0
Cold-shock protein {ECO:0000313|EMBL:AIT06538.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cold-shock DNA-binding protein family protein
SCNpilot_expt_500_bf_scaffold_2088_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5067..5597)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037752E9
Sphingomonas taxi strain 30a NODE_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27983.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2088_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5702..7429
DNA (1728bp) protein (576aa)
AMP-binding enzyme family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYI4_9SPHN rbh
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12271.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
acyl-CoA synthetase rbh
SCNpilot_expt_500_bf_scaffold_2088_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7492..9864
DNA (2373bp) protein (791aa)
diguanylate cyclase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA62B
Diguanylate cyclase {ECO:0000313|EMBL:AIT06541.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_500_bf_scaffold_2088_13
unknown

Not on your lists

comp(9938..10114)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2088_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10245..10784
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000289B361
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65282.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_500_bf_scaffold_2088_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11050..14982)
DNA (3933bp) protein (1311aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B2F0D7 rbh
TonB-dependent receptor {ECO:0000313|EMBL:KHS46709.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_2088_16

Not on your lists

comp(14979..16499)
DNA (1521bp) protein (507aa)
sulfotransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5F22B
Tetratricopeptide repeat {ECO:0000313|EMBL:AGU10228.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2088_17

Not on your lists

16660..16917
DNA (258bp) protein (86aa)
SecE/Sec61-gamma subunits of protein translocation complex n=1 Tax=uncultured organism RepID=T1WBP1_9ZZZZ
SecE/Sec61-gamma subunits of protein translocation complex {ECO:0000313|EMBL:AGU12248.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
protein translocase subunit secE/sec61 gamma; K03073 preprotein translocase subunit SecE
SCNpilot_expt_500_bf_scaffold_2088_18

Not on your lists

16937..17473
DNA (537bp) protein (179aa)
transcription antitermination protein NusG n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6187C rbh
Transcription termination factor nusG {ECO:0000313|EMBL:AGU12249.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
NusG antitermination factor; K02601 transcriptional antiterminator NusG rbh
SCNpilot_expt_500_bf_scaffold_2088_19
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17586..18962)
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028A2876 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO38791.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2088_20
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18972..19943)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B432B8
Phosphoesterase, PA-phosphatase related protein {ECO:0000313|EMBL:KEZ12038.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2088_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20013..20216)
DNA (204bp) protein (68aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|SAAS:SAAS00230973};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
diguanylate cyclase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00030EA6B1
Displaying 21 items

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