ggKbase home page

SCNpilot_expt_500_bf_scaffold_2702

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2702_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..414)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A435
Uncharacterized protein {ECO:0000313|EMBL:GAM00711.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2702_2

Not on your lists

comp(411..1019)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B4A6D8
Marine sediment metagenome DNA, contig: S01H4_L05764 {ECO:0000313|EMBL:GAG86082.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_500_bf_scaffold_2702_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1030..1227)
DNA (198bp) protein (66aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM00713.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_expt_500_bf_scaffold_2702_4
unknown

Not on your lists

comp(1342..1782)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A433
SCNpilot_expt_500_bf_scaffold_2702_5
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1785..2714)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A432
Uncharacterized protein {ECO:0000313|EMBL:GAM00715.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2702_6
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2936..3886)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B0S4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KFX28030.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2702_7
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3876..4277)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A430
Uncharacterized protein {ECO:0000313|EMBL:GAM00717.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_expt_500_bf_scaffold_2702_8
unknown

Not on your lists

comp(4274..4531)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2702_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4531..6204)
DNA (1674bp) protein (558aa)
phage head-tail connector protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A42F
Uncharacterized protein {ECO:0000313|EMBL:GAM00718.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
phage head-tail connector protein
SCNpilot_expt_500_bf_scaffold_2702_10
[Eubacterium] infirmum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6257..6892)
DNA (636bp) protein (212aa)
Putative uncharacterized protein {ECO:0000313|EMBL:EHO82663.1}; TaxID=883109 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium infirmum F0142.;"
SCNpilot_expt_500_bf_scaffold_2702_11
unknown

Not on your lists

comp(6903..7142)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A42D
SCNpilot_expt_500_bf_scaffold_2702_12
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7144..8448)
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A42C
Uncharacterized protein {ECO:0000313|EMBL:GAM00722.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2702_13
unknown

Not on your lists

comp(8653..8973)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2702_14
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10322..12178)
DNA (1857bp) protein (619aa)
DNA primase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A429 rbh
DNA primase rbh
DNA primase {ECO:0000313|EMBL:BAI73189.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Displaying 14 items

View Taxonomy