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SCNpilot_expt_500_bf_scaffold_2711

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2711_1
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1739)
DNA (1737bp) protein (579aa)
glycosyl hydrolase family protein; K05349 beta-glucosidase [EC:3.2.1.21]
hypothetical protein n=1 Tax=Pseudomonas luteola RepID=UPI000319234E
Beta-glucosidase {ECO:0000313|EMBL:KGB53085.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
SCNpilot_expt_500_bf_scaffold_2711_2
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1736..2368)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00036819A7
Transcriptional regulator, TetR family {ECO:0000313|EMBL:KGB53086.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
TetR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2711_3
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2566..4857
DNA (2292bp) protein (764aa)
TonB-dependent receptor n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EA79_9SPHN rbh
TonB-dependent receptor {ECO:0000313|EMBL:KGB53088.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_2711_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4883..5836
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00037C0376
Xylose isomerase domain-containing protein {ECO:0000313|EMBL:EIL91692.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
xylose isomerase domain-containing protein
SCNpilot_expt_500_bf_scaffold_2711_5
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5833..6678
DNA (846bp) protein (282aa)
UPI0003D621FB related cluster n=1 Tax=unknown RepID=UPI0003D621FB
Lipolytic enzyme, G-D-S-L {ECO:0000313|EMBL:KGB53087.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
GDSL family lipase
SCNpilot_expt_500_bf_scaffold_2711_6
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6683..7108)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J885_9SPHN
Thioesterase superfamily protein {ECO:0000313|EMBL:EZP74646.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
thioesterase superfamily protein
SCNpilot_expt_500_bf_scaffold_2711_7
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7108..8088)
DNA (981bp) protein (327aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002696}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002685};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hemH; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A1I5_9PROT rbh
SCNpilot_expt_500_bf_scaffold_2711_8
unknown

Not on your lists

comp(8176..8337)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2711_9
unknown

Not on your lists

comp(8384..9247)
DNA (864bp) protein (288aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2711_10
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9640..9840)
DNA (201bp) protein (67aa)
general stress protein CsbD n=1 Tax=Sphingomonas echinoides RepID=UPI00026CBD02
Uncharacterized protein {ECO:0000313|EMBL:AHE53081.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
CsbD-like protein
SCNpilot_expt_500_bf_scaffold_2711_11
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9890..10882)
DNA (993bp) protein (331aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
bifunctional sulfur carrier protein/thiazole synthase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028A0516 rbh
bifunctional sulfur carrier protein/thiazole synthase protein
SCNpilot_expt_500_bf_scaffold_2711_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10972..11406
DNA (435bp) protein (145aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Sphingomonas melonis RepID=UPI0003703D4C
SCNpilot_expt_500_bf_scaffold_2711_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11525..11878
DNA (354bp) protein (118aa)
acetyl-CoA carboxylase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B53C72
Acetyl-CoA carboxylase {ECO:0000313|EMBL:AIT05981.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
bccP; acetyl-CoA carboxylase biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_expt_500_bf_scaffold_2711_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11886..13238
DNA (1353bp) protein (451aa)
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Sphingomonas sp. S17 RepID=F3WZM7_9SPHN rbh
AccC protein {ECO:0000313|EMBL:GAN13896.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
acetyl-CoA carboxylase, biotin carboxylase rbh
SCNpilot_expt_500_bf_scaffold_2711_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13407..14036
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3ED4E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO40597.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_500_bf_scaffold_2711_16
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14155..14844
DNA (690bp) protein (230aa)
membrane protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD1012
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2711_17
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14854..15174
DNA (321bp) protein (107aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000374C5C7
putative arsenate reductase
SCNpilot_expt_500_bf_scaffold_2711_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15171..16598
DNA (1428bp) protein (476aa)
plD; phospholipase D (EC:3.1.4.4) rbh
phospholipase D n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6CB4A rbh
Phospholipase D {ECO:0000313|EMBL:AJP72746.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_2711_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16661..17155
DNA (495bp) protein (165aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacter
phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
phosphoribosylglycinamide synthetase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000367C90D
SCNpilot_expt_500_bf_scaffold_2711_20
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17133..18845
DNA (1713bp) protein (571aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacter
phosphoribosylformylglycinamidine synthase II; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
phosphoribosylglycinamide synthetase n=1 Tax=Sphingomonas melonis RepID=UPI0003777D8E
SCNpilot_expt_500_bf_scaffold_2711_21
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18905..19510
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D9L8_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU75637.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2711_22
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19634..20233)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI00035D1682
PEP-CTERM motif protein {ECO:0000313|EMBL:EXI71493.1}; Flags: Precursor;; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2711_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20390..21223)
DNA (834bp) protein (278aa)
phosphomannose isomerase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B658C0 rbh
Phosphoheptose isomerase {ECO:0000313|EMBL:AJP70655.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphomannose isomerase-like protein
SCNpilot_expt_500_bf_scaffold_2711_24
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21325..22254
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000380A995 rbh
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
DNA uptake lipoprotein-like protein; K05807 putative lipoprotein rbh
SCNpilot_expt_500_bf_scaffold_2711_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22324..23979
DNA (1656bp) protein (552aa)
DNA repair protein RecN n=1 Tax=Sphingomonas melonis RepID=UPI000375CE09 rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA repair protein RecN rbh
SCNpilot_expt_500_bf_scaffold_2711_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23979..24959
DNA (981bp) protein (327aa)
cobalt transporter n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B43387 rbh
Cobalt transporter {ECO:0000313|EMBL:AIT06606.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cation diffusion facilitator family transporter rbh
SCNpilot_expt_500_bf_scaffold_2711_27
unknown

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24929..25405
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2711_28
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25402..26655
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RE76_PHEZH rbh
hypothetical protein; K07148 uncharacterized protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_500_bf_scaffold_2711_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26690..26860
DNA (171bp) protein (57aa)
BFD-like [2Fe-2S] binding domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVI1_9SPHN
(2Fe-2S)-binding protein {ECO:0000313|EMBL:AJP72752.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative bacterioferritin-associated ferredoxin
SCNpilot_expt_500_bf_scaffold_2711_30
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26961..27440
DNA (480bp) protein (160aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
bacterioferritin n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B669B5
bacterioferritin; K03594 bacterioferritin
Displaying items 1-30 of 41 in total

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