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SCNpilot_expt_500_bf_scaffold_1776

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1776_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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42..1079
DNA (1038bp) protein (346aa)
Diguanylate cyclase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJM1_RHITR rbh
diguanylate cyclase rbh
Diguanylate cyclase {ECO:0000313|EMBL:AGB70294.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1133..1324)
DNA (192bp) protein (64aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V787_9RHIZ
dxs; 1-deoxy-D-xylulose-5-phosphate synthase
SCNpilot_expt_500_bf_scaffold_1776_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1282..2970)
DNA (1689bp) protein (563aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V787_9RHIZ rbh
dxs; 1-deoxy-D-xylulose-5-phosphate synthase rbh
SCNpilot_expt_500_bf_scaffold_1776_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3094..3981)
DNA (888bp) protein (296aa)
Pirin domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHV4_RHITR
pirin domain-containing protein
Pirin domain-containing protein {ECO:0000313|EMBL:AGB70296.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4053..4304)
DNA (252bp) protein (84aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGF1_RHITR
xseB; exodeoxyribonuclease VII, small subunit
SCNpilot_expt_500_bf_scaffold_1776_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4307..5248)
DNA (942bp) protein (314aa)
Putative deacetylase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFX0_RHITR rbh
putative deacetylase rbh
Putative deacetylase {ECO:0000313|EMBL:AGB70298.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5456..5818
DNA (363bp) protein (121aa)
Thioesterase superfamily protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJM6_RHITR
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:AGB70299.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5878..6435)
DNA (558bp) protein (186aa)
Biotin uptake transporter BioY n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJQ0_RHITR rbh
bioY1; biotin uptake transporter BioY rbh
Biotin uptake transporter BioY {ECO:0000313|EMBL:AGB70300.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6464..6736)
DNA (273bp) protein (91aa)
Biotin ABC transporter, permease protein BioN n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHV9_RHITR
bioN; biotin ABC transporter, permease protein BioN
Biotin ABC transporter, permease protein BioN {ECO:0000313|EMBL:AGB70301.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6720..7028)
DNA (309bp) protein (103aa)
Biotin ABC transporter, permease protein BioN n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHV9_RHITR
bioN; biotin ABC transporter, permease protein BioN
Biotin ABC transporter, permease protein BioN {ECO:0000313|EMBL:AGB70301.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7028..7705)
DNA (678bp) protein (226aa)
Biotin ABC transporter, ATP-binding protein BioM n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGF5_RHITR rbh
bioM; biotin ABC transporter, ATP-binding protein BioM rbh
Biotin ABC transporter, ATP-binding protein BioM {ECO:0000313|EMBL:AGB70302.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7786..9003
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFX4_RHITR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGB70303.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9335..9814
DNA (480bp) protein (160aa)
Putative acetyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJQ4_RHITR
putative acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:AGB70305.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_14
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9936..10397)
DNA (462bp) protein (154aa)
AsnC family transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VHZ5_9RHIZ
AsnC family transcriptional regulator {ECO:0000313|EMBL:EJZ17345.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
leucine-responsive regulatory protein
SCNpilot_expt_500_bf_scaffold_1776_15
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10536..11780
DNA (1245bp) protein (415aa)
argG2; argininosuccinate synthase; K01940 argininosuccinate synthase [EC:6.3.4.5] rbh
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
Argininosuccinate synthase n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JA15_AGRRK rbh
SCNpilot_expt_500_bf_scaffold_1776_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11944..13047)
DNA (1104bp) protein (368aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHW4_RHITR rbh
riboflavin biosynthesis protein ribBA rbh
SCNpilot_expt_500_bf_scaffold_1776_17
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13058..14155)
DNA (1098bp) protein (366aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Chorismate synthase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V798_9RHIZ rbh
aroC; chorismate synthase rbh
SCNpilot_expt_500_bf_scaffold_1776_18
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14574..14834
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VDD7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN89052.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1776_19
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14946..15542)
DNA (597bp) protein (199aa)
Phosphoglycerate mutase protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJR0_RHITR rbh
phosphoglycerate mutase protein rbh
Phosphoglycerate mutase protein {ECO:0000313|EMBL:AGB70310.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_1776_20
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15561..16379)
DNA (819bp) protein (273aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U916_9RHIZ rbh
oxidoreductase, short chain dehydrogenase/reductase family rbh
SCNpilot_expt_500_bf_scaffold_1776_21
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16502..17515)
DNA (1014bp) protein (338aa)
Molecular chaperone protein, DnaJ family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGG5_RHITR rbh
molecular chaperone protein, DnaJ family rbh
Molecular chaperone protein, DnaJ family {ECO:0000313|EMBL:AGB70312.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 21 items

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