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SCNpilot_expt_500_bf_scaffold_6092

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6092_1
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..512)
DNA (510bp) protein (170aa)
Putative TetR-family transcriptional regulator n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0A9R3_COLFT
putative TetR-family transcriptional regulator
Putative TetR-family transcriptional regulator {ECO:0000313|EMBL:AEK62686.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
SCNpilot_expt_500_bf_scaffold_6092_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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570..1745
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Burkholderia bryophila RepID=UPI000361C5EB
Bradyrhizobium elkanii strain UASWS1015 Contig176, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48637.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
3-oxoacyl-(acyl-carrier-protein) reductase
SCNpilot_expt_500_bf_scaffold_6092_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1798..3108
DNA (1311bp) protein (437aa)
Major facilitator superfamily (MFS) transporter n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHY5_RHITR rbh
major facilitator superfamily (MFS) transporter rbh
Major facilitator superfamily (MFS) transporter {ECO:0000313|EMBL:AGB69660.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_6092_4
Thermus thermophilus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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3175..4080
DNA (906bp) protein (302aa)
Hygromycin phosphotransferase n=3 Tax=cellular organisms RepID=G8G9R1_SOLTU
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:AJD87519.1}; TaxID=300852 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579).;"
hygromycin-B
SCNpilot_expt_500_bf_scaffold_6092_5
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4077..4970)
DNA (894bp) protein (298aa)
Transcriptional regulators, LysR family n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BSZ4_GRABC rbh
LysR family transcriptional regulator rbh
Transcriptional regulators, LysR family {ECO:0000313|EMBL:ABI62058.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_expt_500_bf_scaffold_6092_6
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

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5081..5830
DNA (750bp) protein (250aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TLE9_RICCO rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EEF23315.1}; Flags: Fragment;; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_expt_500_bf_scaffold_6092_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5846..6787)
DNA (942bp) protein (314aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6US64_9RHIZ rbh
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:ENN84535.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
nucleoside-diphosphate-sugar epimerases rbh
SCNpilot_expt_500_bf_scaffold_6092_8
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7037..7675)
DNA (639bp) protein (213aa)
UbiE/COQ5 family methlytransferase n=3 Tax=Ochrobactrum RepID=C4WR08_9RHIZ rbh
Ubiquinone biosynthesis protein UbiE {ECO:0000313|EMBL:ERI15465.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
methyltransferase
SCNpilot_expt_500_bf_scaffold_6092_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7672..8559)
DNA (888bp) protein (296aa)
Putative transcriptional regulator n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LEU5_RHITR rbh
putative transcriptional regulator rbh
Putative transcriptional regulator {ECO:0000313|EMBL:AGB69662.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_6092_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8653..9549
DNA (897bp) protein (299aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V097_9RHIZ rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ENN84537.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
NAD-dependent epimerase/dehydratase rbh
SCNpilot_expt_500_bf_scaffold_6092_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9719..10042)
DNA (324bp) protein (108aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHV2_RHITR
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGB69664.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 11 items

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