ggKbase home page

SCNpilot_expt_500_bf_scaffold_5167

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5167_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1583)
DNA (1581bp) protein (527aa)
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LK11_RHITR
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:AGB70415.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
indolepyruvate ferredoxin oxidoreductase
SCNpilot_expt_500_bf_scaffold_5167_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1876..2568
DNA (693bp) protein (231aa)
Putative glutathione S-transferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJY9_RHITR rbh
putative glutathione S-transferase rbh
Putative glutathione S-transferase {ECO:0000313|EMBL:AGB70414.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5167_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2590..2904)
DNA (315bp) protein (105aa)
Putative transcriptional regulator protein, LysR family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZI4_9RHIZ
Putative transcriptional regulator protein, LysR family {ECO:0000313|EMBL:ENN86131.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transcriptional regulator, LysR family
SCNpilot_expt_500_bf_scaffold_5167_4
unknown

Not on your lists

2908..3225
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5167_5
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3087..3458)
DNA (372bp) protein (124aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2WCQ8_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJK80435.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
transcriptional regulator, LysR family
SCNpilot_expt_500_bf_scaffold_5167_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3609..3794
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGR4_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB70412.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5167_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3821..4177
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U0E5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN86129.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5167_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4183..4803)
DNA (621bp) protein (207aa)
Putative glutathione S-transferase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U799_9RHIZ rbh
Putative glutathione S-transferase {ECO:0000313|EMBL:ENN86128.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
glutathione S-transferase rbh
SCNpilot_expt_500_bf_scaffold_5167_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4958..5314)
DNA (357bp) protein (119aa)
ADP-ribose pyrophosphatase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJY6_RHITR
ADP-ribose pyrophosphatase
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:AGB70409.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5167_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6314..6802
DNA (489bp) protein (163aa)
Membrane protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGQ9_RHITR rbh
membrane protein rbh
Membrane protein {ECO:0000313|EMBL:AGB70407.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5167_11
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6817..7824)
DNA (1008bp) protein (336aa)
L-asparaginase II n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U0E1_9RHIZ rbh
L-asparaginase II {ECO:0000313|EMBL:ENN86124.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
L-asparaginase II rbh
SCNpilot_expt_500_bf_scaffold_5167_12
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7924..8550)
DNA (627bp) protein (209aa)
Transcriptional regulator n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U796_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:ENN86123.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_5167_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8652..10076
DNA (1425bp) protein (475aa)
Putative major facilitator superfamily (MFS) drug efflux transporter n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJX9_RHITR rbh
putative major facilitator superfamily (MFS) drug efflux transporter rbh
Putative major facilitator superfamily (MFS) drug efflux transporter {ECO:0000313|EMBL:AGB70404.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5167_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10057..11055)
DNA (999bp) protein (333aa)
Putative quinone oxidoreductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LG80_RHITR rbh
putative quinone oxidoreductase rbh
Putative quinone oxidoreductase {ECO:0000313|EMBL:AGB70403.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5167_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11135..11284)
DNA (150bp) protein (50aa)
Putative GGDEF/EAL sensory box protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UWT8_9RHIZ
Putative GGDEF/EAL sensory box protein {ECO:0000313|EMBL:ENN86120.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_500_bf_scaffold_5167_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11284..12891)
DNA (1608bp) protein (536aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGQ4_RHITR rbh
diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:AGB70402.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5167_17
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(13103..13354)
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TM86_RICCO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEF23029.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_expt_500_bf_scaffold_5167_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13586..14122)
DNA (537bp) protein (179aa)
Putative membrane protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJZ6_RHITR rbh
hypothetical protein rbh
Putative membrane protein {ECO:0000313|EMBL:AGB70400.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5167_19
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14722..14838
DNA (117bp) protein (39aa)
HTH-type transcriptional regulator BetI n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V541_9RHIZ
HTH-type transcriptional regulator BetI {ECO:0000256|HAMAP-Rule:MF_00768}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
betI; transcriptional regulator BetI; K02167 TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
SCNpilot_expt_500_bf_scaffold_5167_20
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14844..15485
DNA (642bp) protein (214aa)
Glutathione S-transferase domain protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZH6_9RHIZ rbh
Glutathione S-transferase domain protein {ECO:0000313|EMBL:ENN86116.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
gstA; glutathione S-transferase rbh
SCNpilot_expt_500_bf_scaffold_5167_21
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15485..16948
DNA (1464bp) protein (488aa)
NAD/NADP-dependent betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00804}; Short=BADH {ECO:0000256|HAMAP-Rule:MF_00804};; EC=1.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00804};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
NAD/NADP-dependent betaine aldehyde dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LG75_RHITR rbh
betB; betaine aldehyde dehydrogenase rbh
SCNpilot_expt_500_bf_scaffold_5167_22
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17149..18705
DNA (1557bp) protein (519aa)
Oxygen-dependent choline dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054588}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_00750};; Short=CHD {ECO:0000256|HAMAP-Rule:MF_00750};; EC=1.1.99.1 {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054587};; Betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT
Oxygen-dependent choline dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGQ0_RHITR rbh
betA; choline dehydrogenase rbh
Displaying 22 items

View Taxonomy