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SCNpilot_expt_500_bf_scaffold_5478

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5478_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..304)
DNA (303bp) protein (101aa)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Ribonuclease D n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U6D9_9RHIZ
rnd; ribonuclease D
SCNpilot_expt_500_bf_scaffold_5478_2
unknown

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649..1791
DNA (1143bp) protein (381aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5478_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2081..3691
DNA (1611bp) protein (537aa)
Aspartate--tRNA ligase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKR5_RHITR
aspS; aspartyl-tRNA synthetase
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:AGB70684.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5478_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3871..5040)
DNA (1170bp) protein (390aa)
Beta-lactamase family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKU9_RHITR rbh
beta-lactamase family protein rbh
Beta-lactamase family protein {ECO:0000313|EMBL:AGB70685.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5478_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5534..5689
DNA (156bp) protein (52aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJ03_RHITR
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGB70686.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5478_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5765..6952)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHI0_RHITR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGB70687.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5478_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7184..9442
DNA (2259bp) protein (753aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
DNA topoisomerase 4 subunit A n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LH23_RHITR rbh
parC; DNA topoisomerase IV, A subunit rbh
SCNpilot_expt_500_bf_scaffold_5478_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9581..10159)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UYL7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN85856.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
doc; phage death on curing protein; K07341 death on curing protein
SCNpilot_expt_500_bf_scaffold_5478_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10205..11092)
DNA (888bp) protein (296aa)
Integral membrane protein DUF6 n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJ07_RHITR rbh
integral membrane protein DUF6 rbh
Integral membrane protein DUF6 {ECO:0000313|EMBL:AGB70691.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5478_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11093..11872)
DNA (780bp) protein (260aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Putative arginyl-tRNA--protein transferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHI4_RHITR rbh
putative arginyl-tRNA protein transferase rbh
SCNpilot_expt_500_bf_scaffold_5478_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12055..12513)
DNA (459bp) protein (153aa)
RDD domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LH27_RHITR
RDD domain-containing protein
RDD domain-containing protein {ECO:0000313|EMBL:AGB70693.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5478_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12685..13698)
DNA (1014bp) protein (338aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Delta-aminolevulinic acid dehydratase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKS4_RHITR rbh
hemB; delta-aminolevulinic acid dehydratase rbh
SCNpilot_expt_500_bf_scaffold_5478_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13740..14285
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKV8_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB70695.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5478_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14416..14934
DNA (519bp) protein (173aa)
Transcriptional regulator, MarR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJ11_RHITR rbh
transcriptional regulator, MarR family rbh
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AGB70696.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_5478_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15449..15949
DNA (501bp) protein (167aa)
Peptidoglycan-binding protein domain 1 protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TZL6_9RHIZ
putative peptidoglycan-binding protein
Peptidoglycan-binding protein domain 1 protein {ECO:0000313|EMBL:ENN85864.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_500_bf_scaffold_5478_16
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16006..16713
DNA (708bp) protein (236aa)
Peptidoglycan binding protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JCX3_AGRRK rbh
peptidoglycan binding protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EJK85583.1}; Flags: Fragment;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_500_bf_scaffold_5478_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16890..18080
DNA (1191bp) protein (397aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Serine hydroxymethyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKS9_RHITR rbh
glyA; serine hydroxymethyltransferase rbh
Displaying 17 items

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