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SCNpilot_expt_500_bf_scaffold_3152

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3152_1
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..641)
DNA (639bp) protein (213aa)
Sugar ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FT59_9RHIZ rbh
Inner-membrane translocator {ECO:0000313|EMBL:CCV07150.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_3152_2
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(638..1591)
DNA (954bp) protein (318aa)
UPI0003CDFEE3 related cluster n=1 Tax=unknown RepID=UPI0003CDFEE3 rbh
ABC transporter permease {ECO:0000313|EMBL:ESY69162.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
inner-membrane translocator rbh
SCNpilot_expt_500_bf_scaffold_3152_3
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1588..2337)
DNA (750bp) protein (250aa)
UPI0003CEEF2E related cluster n=1 Tax=unknown RepID=UPI0003CEEF2E rbh
Uncharacterized protein {ECO:0000313|EMBL:ESW87687.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ABC transporter rbh
SCNpilot_expt_500_bf_scaffold_3152_4
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2330..3067)
DNA (738bp) protein (246aa)
UPI0003CF9451 related cluster n=1 Tax=unknown RepID=UPI0003CF9451 rbh
ABC transporter related protein {ECO:0000313|EMBL:CDX12354.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC transporter rbh
SCNpilot_expt_500_bf_scaffold_3152_5
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3128..4315)
DNA (1188bp) protein (396aa)
UPI0003CF278C related cluster n=1 Tax=unknown RepID=UPI0003CF278C rbh
Ribose ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW87565.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ribose ABC transporter, substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_3152_6
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4646..5740
DNA (1095bp) protein (365aa)
6-phosphogluconolactonase (EC:3.1.1.31); K07404 6-phosphogluconolactonase [EC:3.1.1.31] rbh
UPI0003D01019 related cluster n=1 Tax=unknown RepID=UPI0003D01019 rbh
6-phosphogluconolactonase {ECO:0000313|EMBL:ESZ18467.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_expt_500_bf_scaffold_3152_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5955..7031
DNA (1077bp) protein (359aa)
ABC-type spermidine/putrescine transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J3B9G0_9RHIZ rbh
Polyamine ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDN56427.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
iron ABC transporter ATPase rbh
SCNpilot_expt_500_bf_scaffold_3152_8
unknown

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comp(7064..7381)
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3152_9
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7689..8213
DNA (525bp) protein (175aa)
periplasmic maltose-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037B0D00
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGD97014.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
ABC transporter substrate-binding protein
SCNpilot_expt_500_bf_scaffold_3152_10
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8278..9102
DNA (825bp) protein (275aa)
Permease component of ABC-type sugar transporter n=1 Tax=Rhizobium sp. CF080 RepID=J2HTR5_9RHIZ rbh
Putative binding-protein-dependent transport system membrane protein {ECO:0000313|EMBL:CDN56429.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
binding-protein-dependent transport systems inner membrane component rbh
SCNpilot_expt_500_bf_scaffold_3152_11
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9099..9935
DNA (837bp) protein (279aa)
spermidine/putrescine ABC transporter permease n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037D887A rbh
PotC protein {ECO:0000313|EMBL:CDN50311.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
ABC transporter permease rbh
SCNpilot_expt_500_bf_scaffold_3152_12
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9932..10954
DNA (1023bp) protein (341aa)
Transcriptional regulator, LacI family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A434_RHILW rbh
LacI family transcription regulator {ECO:0000313|EMBL:CDN50312.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
LacI family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_3152_13
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10951..11613)
DNA (663bp) protein (221aa)
LysR substrate binding domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RJU5_9PROT
LysR substrate binding domain protein {ECO:0000313|EMBL:EFH12424.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
LysR family transcriptional regulator
Displaying 13 items

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