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SCNpilot_expt_500_bf_scaffold_3915

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3915_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..839)
DNA (837bp) protein (279aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
2-polyprenylphenol 6-hydroxylase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIF5_RHITR
ubiB; 2-polyprenylphenol 6-hydroxylase
SCNpilot_expt_500_bf_scaffold_3915_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(965..1741)
DNA (777bp) protein (259aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tro
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGM3_RHITR rbh
ubiquinone/menaquinone biosynthesis methyltransferase rbh
SCNpilot_expt_500_bf_scaffold_3915_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1987..2877
DNA (891bp) protein (297aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Formamidopyrimidine-DNA glycosylase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UA85_9RHIZ rbh
mutM; formamidopyrimidine-DNA glycosylase rbh
SCNpilot_expt_500_bf_scaffold_3915_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2897..3670
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LEM9_RHITR rbh
enoyl-CoA hydratase rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:AGB69858.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_3915_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3864..4139
DNA (276bp) protein (92aa)
30S ribosomal protein S20 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V8H4_9RHIZ
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
rpsT; 30S ribosomal protein S20
SCNpilot_expt_500_bf_scaffold_3915_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4984..6534
DNA (1551bp) protein (517aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIG1_RHITR rbh
dnaA; chromosomal replication initiator protein DnaA rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_3915_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6629..7525)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UH05_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ENN89483.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transcriptional regulator, LysR family rbh
SCNpilot_expt_500_bf_scaffold_3915_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7681..8604
DNA (924bp) protein (308aa)
Drug/metabolite exporter (DME) family transporter n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFA5_RHITR rbh
drug/metabolite exporter (DME) family transporter rbh
Drug/metabolite exporter (DME) family transporter {ECO:0000313|EMBL:AGB69862.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_3915_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8708..9883)
DNA (1176bp) protein (392aa)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LEN4_RHITR rbh
putative oxygen-independent coproporphyrinogen III oxidase rbh
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:AGB69863.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_3915_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9920..10564)
DNA (645bp) protein (215aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobi
Non-canonical purine NTP pyrophosphatase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIE2_RHITR rbh
putative nucleoside-triphosphatase rbh
SCNpilot_expt_500_bf_scaffold_3915_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10576..10962)
DNA (387bp) protein (129aa)
Glyoxalase/bleomycin resistance protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIG5_RHITR
glyoxalase/bleomycin resistance protein
Glyoxalase/bleomycin resistance protein {ECO:0000313|EMBL:AGB69865.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 11 items

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