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SCNpilot_expt_500_bf_scaffold_4026

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4026_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..327
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WSK8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK85998.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4026_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(353..820)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6B2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN89380.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
putative globin
SCNpilot_expt_500_bf_scaffold_4026_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1084..2067
DNA (984bp) protein (328aa)
Putative rubrerythrin n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LI27_RHITR rbh
putative rubrerythrin rbh
Putative rubrerythrin {ECO:0000313|EMBL:AGB69744.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2146..2658)
DNA (513bp) protein (171aa)
Transglutaminase family protein cysteine peptidase btlcp n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGC5_RHITR rbh
transglutaminase family protein cysteine peptidase btlcp rbh
Transglutaminase family protein cysteine peptidase btlcp {ECO:0000313|EMBL:AGB69746.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2981..3793)
DNA (813bp) protein (271aa)
2-hydroxymuconic semialdehyde hydrolase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LF13_RHITR rbh
2-hydroxymuconic semialdehyde hydrolase rbh
2-hydroxymuconic semialdehyde hydrolase {ECO:0000313|EMBL:AGB69747.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4057..4608
DNA (552bp) protein (184aa)
Translation initiation factor IF-3 n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LED2_RHITR rbh
infC; translation initiation factor IF-3 rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4930..5133
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=5 Tax=Rhizobium/Agrobacterium group RepID=RL35_AGRRK
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_500_bf_scaffold_4026_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5171..5575
DNA (405bp) protein (135aa)
50S ribosomal protein L20 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V876_9RHIZ
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
rplT; 50S ribosomal protein L20
SCNpilot_expt_500_bf_scaffold_4026_9
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5904..6596
DNA (693bp) protein (231aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Rhizobium/Agrobacterium group RepID=SYFA_AGRRK
SCNpilot_expt_500_bf_scaffold_4026_10
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6556..6942
DNA (387bp) protein (129aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VE59_9RHIZ
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_500_bf_scaffold_4026_9].
SCNpilot_expt_500_bf_scaffold_4026_11
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6959..9382
DNA (2424bp) protein (808aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UGS5_9RHIZ rbh
pheT; phenylalanyl-tRNA synthetase, beta subunit rbh
SCNpilot_expt_500_bf_scaffold_4026_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9633..9992)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LI60_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB69755.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10083..15122)
DNA (5040bp) protein (1680aa)
Alpha-2-macroglobulin domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LF24_RHITR rbh
alpha-2-macroglobulin domain-containing protein rbh
Alpha-2-macroglobulin domain-containing protein {ECO:0000313|EMBL:AGB69757.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15143..15733)
DNA (591bp) protein (197aa)
Alpha-2-macroglobulin domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LF24_RHITR
alpha-2-macroglobulin domain-containing protein
Alpha-2-macroglobulin domain-containing protein {ECO:0000313|EMBL:AGB69757.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_15
unknown

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16116..17630
DNA (1515bp) protein (505aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4026_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17881..18768)
DNA (888bp) protein (296aa)
Aldo-keto reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LEE0_RHITR rbh
aldo-keto reductase rbh
Aldo-keto reductase {ECO:0000313|EMBL:AGB69758.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18899..19792
DNA (894bp) protein (298aa)
Putative transcriptional regulator, LysR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LI39_RHITR rbh
putative transcriptional regulator, LysR family rbh
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:AGB69759.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19907..20521
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LI65_RHITR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGB69760.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_19
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20514..20957)
DNA (444bp) protein (148aa)
Putative acetyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGD7_RHITR
putative acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:AGB69761.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_500_bf_scaffold_4026_20
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20986..21936)
DNA (951bp) protein (317aa)
Putative oxidoreductase transmembrane protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V888_9RHIZ rbh
Putative oxidoreductase transmembrane protein {ECO:0000313|EMBL:ENN89396.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
putative oxidoreductase rbh
Displaying 20 items

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