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SCNpilot_expt_500_bf_scaffold_12340

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_12340_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..300
DNA (300bp) protein (100aa)
Sugar ABC transporter, permease protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V606_VARPE
Sugar ABC transporter permease {ECO:0000313|EMBL:KDP76547.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
sugar ABC transporter permease; K02025 multiple sugar transport system permease protein
SCNpilot_expt_500_bf_scaffold_12340_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

297..674
DNA (378bp) protein (126aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJL6_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:KDP76546.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_expt_500_bf_scaffold_12340_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

668..1117
DNA (450bp) protein (150aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJL6_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:KDP76546.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_expt_500_bf_scaffold_12340_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1131..2177
DNA (1047bp) protein (349aa)
xylitol (sorbitol) dehydrogenase; K05351 D-xylulose reductase [EC:1.1.1.9] rbh
Putative D-xylulose reductase n=1 Tax=Rhizobium sp. RepID=L0NLA9_RHISP rbh
Sulfurtransferase {ECO:0000313|EMBL:KDP76545.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_500_bf_scaffold_12340_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2179..2922
DNA (744bp) protein (248aa)
Alpha-glucoside transport ATP-binding protein AglK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8H8_9RHIZ
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KDP76544.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ABC transporter
SCNpilot_expt_500_bf_scaffold_12340_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2934..3242
DNA (309bp) protein (103aa)
UPI0003D01BA4 related cluster n=1 Tax=unknown RepID=UPI0003D01BA4
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KDP76544.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ATPase component of ABC-type sugar transporter
SCNpilot_expt_500_bf_scaffold_12340_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3898..4488
DNA (591bp) protein (197aa)
PfkB domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXB4_9RHIZ rbh
Sugar kinase, ribokinase family {ECO:0000313|EMBL:EYR84555.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PfkB domain-containing protein
SCNpilot_expt_500_bf_scaffold_12340_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4508..5035
DNA (528bp) protein (176aa)
carbohydrate kinase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E0561
Sugar kinase, ribokinase family {ECO:0000313|EMBL:EYR84555.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PfkB domain-containing protein
SCNpilot_expt_500_bf_scaffold_12340_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5078..5845
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUL3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR84556.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_12340_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5872..6642
DNA (771bp) protein (257aa)
Ribose import ATP-binding protein RbsA 2 {ECO:0000313|EMBL:EYR84557.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR84557.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
Ribose import ATP-binding protein RbsA 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD12_9RHIZ rbh
SCNpilot_expt_500_bf_scaffold_12340_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6673..7497
DNA (825bp) protein (275aa)
Autoinducer 2-binding protein LsrB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSX7_9RHIZ rbh
Autoinducer 2-binding protein LsrB {ECO:0000313|EMBL:EYR84558.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter substrate-binding protein; K10555 AI-2 transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_12340_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7631..8608
DNA (978bp) protein (326aa)
sugar ABC transporter permease n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035E7AA5 rbh
Autoinducer 2 import system permease protein LsrC {ECO:0000313|EMBL:EYR84559.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inner-membrane translocator rbh
SCNpilot_expt_500_bf_scaffold_12340_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8605..9369
DNA (765bp) protein (255aa)
sugar ABC transporter permease n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003776BE5 rbh
Ribose/xylose/arabinose/galactoside ABC-type transport system permease component {ECO:0000313|EMBL:EYR84560.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inner-membrane translocator rbh
Displaying 13 items

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