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SCNpilot_expt_500_bf_scaffold_661

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_661_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..693
DNA (693bp) protein (231aa)
Organic solvent tolerance protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGK1_PELHB
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
organic solvent tolerance protein; K04744 LPS-assembly protein
SCNpilot_expt_500_bf_scaffold_661_2
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

677..1165
DNA (489bp) protein (163aa)
Organic solvent tolerance protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QBF9_9RHIZ
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
organic solvent tolerance protein
SCNpilot_expt_500_bf_scaffold_661_3
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1176..1691
DNA (516bp) protein (172aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB07554.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_661_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1672..3099)
DNA (1428bp) protein (476aa)
L-serine dehydratase; K01752 L-serine dehydratase [EC:4.3.1.17]
L-serine dehydratase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MB32_RHISN
Serine dehydratase {ECO:0000313|EMBL:KKB76948.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_661_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3208..3807
DNA (600bp) protein (200aa)
Carboxylesterase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCX0_PELHB
Esterase {ECO:0000313|EMBL:KKB07553.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
Carboxylesterase; K06999 phospholipase/carboxylesterase
SCNpilot_expt_500_bf_scaffold_661_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3911..5650
DNA (1740bp) protein (580aa)
Diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07P36_RHOP5 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB08264.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
diguanylate cyclase rbh
SCNpilot_expt_500_bf_scaffold_661_7
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5720..6781
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ58_PARL1
Uncharacterized protein {ECO:0000313|EMBL:KFC62098.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_661_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6778..7074)
DNA (297bp) protein (99aa)
Putative acetyltransferase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HX39_AZOC5
Acetyltransferase {ECO:0000313|EMBL:KKB07552.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
acetyltransferase; K06975
SCNpilot_expt_500_bf_scaffold_661_9
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7203..7598
DNA (396bp) protein (132aa)
Endoribonuclease L-PSP superfamily n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J1E2_POLGS
Endoribonuclease L-PSP {ECO:0000313|EMBL:KKB79460.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
endoribonuclease L-PSP superfamily
SCNpilot_expt_500_bf_scaffold_661_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7758..8297
DNA (540bp) protein (180aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:KKB07536.1}; EC=2.4.2.8 {ECO:0000313|EMBL:KKB07536.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
Hypoxanthine phosphoribosyltransferase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EM39_9RHOB
SCNpilot_expt_500_bf_scaffold_661_11
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8500..9387)
DNA (888bp) protein (296aa)
D-galactarate dehydratase/Altronate hydrolase domain-containing protein (EC:4.2.1.42); K01685 altronate hydrolase [EC:4.2.1.7]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A941A
Galactarate dehydratase {ECO:0000313|EMBL:KKC41124.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
SCNpilot_expt_500_bf_scaffold_661_12
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9384..10022)
DNA (639bp) protein (213aa)
D-galactarate dehydratase/Altronate hydrolase domain-containing protein (EC:4.2.1.42); K01685 altronate hydrolase [EC:4.2.1.7]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A941A
D-galactarate dehydratase/Altronate hydrolase domain protein {ECO:0000313|EMBL:KFC62091.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_bf_scaffold_661_13
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10156..10905
DNA (750bp) protein (250aa)
Transcriptional regulator, GntR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCW6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07537.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
GntR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_661_14
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10920..11207
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003024FB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68586.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_500_bf_scaffold_661_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11207..11644
DNA (438bp) protein (146aa)
RbsD/FucU transport protein family; K02431 L-fucose mutarotase [EC:5.1.3.-]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003660126
Ribose ABC transporter {ECO:0000313|EMBL:KKB07538.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_661_16
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11729..12580
DNA (852bp) protein (284aa)
Ureidoglycolate lyase n=1 Tax=Halomonas sp. HAL1 RepID=G4F4Q8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB79478.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
2,4-diketo-3-deoxy-L-fuconate hydrolase rbh
SCNpilot_expt_500_bf_scaffold_661_17
Oceanibulbus indolifex, Oceanibulbus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12778..13944
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9EGF2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDQ02983.1}; TaxID=391624 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanibulbus.;" source="Oceanibulbus indolifex HEL-45.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_661_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14064..14819
DNA (756bp) protein (252aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
L-aspartate oxidase; K00278 L-aspartate oxidase [EC:1.4.3.16]
L-aspartate oxidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCV1_PELHB
SCNpilot_expt_500_bf_scaffold_661_19
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14836..15612
DNA (777bp) protein (259aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
L-aspartate oxidase; K00278 L-aspartate oxidase [EC:1.4.3.16]
L-aspartate oxidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCV1_PELHB
SCNpilot_expt_500_bf_scaffold_661_20
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15643..16233)
DNA (591bp) protein (197aa)
Transcriptional regulator, TetR family n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39NW5_BURS3
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABB05851.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
SCNpilot_expt_500_bf_scaffold_661_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16374..18416
DNA (2043bp) protein (681aa)
Methyl-accepting chemotaxis protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R655_PELHB
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDP53137.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_500_bf_scaffold_661_22
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18548..19072)
DNA (525bp) protein (175aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase; K03767 peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] id=16969195 bin=RBG_16_Aminicenantes_66_30 tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family-like protein (EC:5.2.1.8)
Uncharacterized protein {ECO:0000313|EMBL:KKB80972.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_661_23
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19396..20976)
DNA (1581bp) protein (527aa)
Putative periplasmic oligopeptide-binding protein n=1 Tax=Peptostreptococcaceae bacterium oral taxon 113 str. W5053 RepID=U2L445_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL29166.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
oligopeptide-binding protein OppA; K15580 oligopeptide transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_661_24
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20991..21992)
DNA (1002bp) protein (334aa)
ABC transporter, ATP-binding protein n=1 Tax=Filifactor alocis (strain ATCC 35896 / D40 B5) RepID=D6GQ30_FILAD rbh
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB83012.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
oligopeptide/dipeptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_661_25
unknown

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comp(21989..22318)
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_661_26
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22315..23319)
DNA (1005bp) protein (335aa)
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RTV1_9CLOT
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL29165.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
oligopeptide/dipeptide ABC transporter ATPase subunit; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_661_27
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23316..24488)
DNA (1173bp) protein (391aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3HDT3_ILYPC
Uncharacterized protein {ECO:0000313|EMBL:KFL29164.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
binding-protein-dependent transport system inner membrane protein; K15582 oligopeptide transport system permease protein
SCNpilot_expt_500_bf_scaffold_661_28
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24485..25414)
DNA (930bp) protein (310aa)
Putative oligopeptide transport system permease protein OppB n=1 Tax=Peptostreptococcaceae bacterium oral taxon 113 str. W5053 RepID=U2LAT7_9FIRM
Peptide ABC transporter permease {ECO:0000313|EMBL:KFL29163.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter permease; K15581 oligopeptide transport system permease protein
SCNpilot_expt_500_bf_scaffold_661_29
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25567..26331)
DNA (765bp) protein (255aa)
putative ABC transporter component; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
histidinol-phosphatase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003755AF9
ABC transporter (Iron.B12.siderophore.hemin) , ATP-binding component {ECO:0000313|EMBL:KFC71274.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_bf_scaffold_661_30
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26328..27362)
DNA (1035bp) protein (345aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Rhizobium sp. CF142 RepID=J2KYF5_9RHIZ rbh
ABC transporter (Iron.B12.siderophore.hemin) , permease component {ECO:0000313|EMBL:KFC71275.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
transport system permease; K02015 iron complex transport system permease protein rbh
Displaying items 1-30 of 39 in total

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