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SCNpilot_expt_500_bf_scaffold_958

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_958_1
bacterium YEK0313, Bacteria

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2..1459
DNA (1458bp) protein (486aa)
CRISPR-associated endonuclease Cas9 {ECO:0000256|HAMAP-Rule:MF_01480}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01480};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036C469A
CRISPR-associated protein; K09952 hypothetical protein
SCNpilot_expt_500_bf_scaffold_958_2

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1516..2436
DNA (921bp) protein (307aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1193513 species="Bacteria; environmental samples.;" source="uncultured bacterium T3_7_42578.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E64F6F rbh
CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1 rbh
SCNpilot_expt_500_bf_scaffold_958_3
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2423..2809
DNA (387bp) protein (129aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI0003612448
CRISPR-associated protein Cas2; K09951 CRISPR-associated protein Cas2
SCNpilot_expt_500_bf_scaffold_958_4
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3069..3878)
DNA (810bp) protein (270aa)
Transcriptional regulator, RpiR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB20_PARDP
Uncharacterized protein {ECO:0000313|EMBL:KKC37305.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
RpiR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_958_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3901..4770)
DNA (870bp) protein (290aa)
inositol-phosphate phosphatase (EC:3.1.3.25); K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol-phosphate phosphatase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB19_PARDP
Inositol-1-monophosphatase {ECO:0000313|EMBL:AHK46302.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_500_bf_scaffold_958_6
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4767..5861)
DNA (1095bp) protein (365aa)
ABC transporter related; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30] rbh
ABC transporter related protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB18_PARDP rbh
ABC transporter related protein {ECO:0000313|EMBL:ABL72712.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_expt_500_bf_scaffold_958_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5866..7536)
DNA (1671bp) protein (557aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB17_PARDP rbh
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:AHK46300.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
binding-protein-dependent transport systems inner membrane component; K02011 iron(III) transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_958_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7595..8605)
DNA (1011bp) protein (337aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB16_PARDP rbh
Putative solute-binding component of ABC transporter {ECO:0000313|EMBL:AHK46299.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_958_9
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8805..11111
DNA (2307bp) protein (769aa)
RNA binding S1 n=1 Tax=Nitratireductor indicus C115 RepID=K2N260_9RHIZ rbh
Transcription accessory protein {ECO:0000313|EMBL:KKB77816.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein; K06959 uncharacterized protein rbh
SCNpilot_expt_500_bf_scaffold_958_10
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11149..12171
DNA (1023bp) protein (341aa)
peptide ABC transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003071786 rbh
ABC transporter permease {ECO:0000313|EMBL:KKB11791.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
binding-protein-dependent transport system inner membrane protein rbh
SCNpilot_expt_500_bf_scaffold_958_11
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12168..13019
DNA (852bp) protein (284aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000307A4C2 rbh
ABC transporter permease {ECO:0000313|EMBL:KKB80312.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
binding-protein-dependent transport system inner membrane protein rbh
SCNpilot_expt_500_bf_scaffold_958_12
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13016..13825
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000319FFC6
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL30489.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter
SCNpilot_expt_500_bf_scaffold_958_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13822..14574
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030E8371
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL30490.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter
SCNpilot_expt_500_bf_scaffold_958_14
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14580..15383
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036A67AC
Uncharacterized protein {ECO:0000313|EMBL:KKB80315.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein; K09164 hypothetical protein
SCNpilot_expt_500_bf_scaffold_958_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15408..17285
DNA (1878bp) protein (626aa)
ABC-type multidrug transport system, ATPase and permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXF1_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB07419.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_500_bf_scaffold_958_16
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17470..17820)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KGV9_9RHIZ
RNA signal recognition particle 4.5S RNA {ECO:0000313|EMBL:KFL32314.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
RNA signal recognition particle 4.5S RNA
SCNpilot_expt_500_bf_scaffold_958_17
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17944..19602
DNA (1659bp) protein (553aa)
Metallo-beta-lactamase family protein, RNA-specific n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8J0_PELHB rbh
Metallo-beta-lactamase family protein, RNA-specific {ECO:0000313|EMBL:KFC68832.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
metallo-beta-lactamase family protein, RNA-specific; K07576 metallo-beta-lactamase family protein rbh
SCNpilot_expt_500_bf_scaffold_958_18
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20189..22912)
DNA (2724bp) protein (908aa)
Cell division protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q7K0_9RHIZ rbh
Cell division protein FtsK {ECO:0000313|EMBL:KFC64327.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
transmembrane DNA translocase; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family rbh
SCNpilot_expt_500_bf_scaffold_958_19
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23160..24497)
DNA (1338bp) protein (446aa)
Ammonium transporter n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BUZ9_9GAMM
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
ammonium transporter; K03320 ammonium transporter, Amt family
SCNpilot_expt_500_bf_scaffold_958_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24524..24862)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7P0_PELHB
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:KKB07966.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2
SCNpilot_expt_500_bf_scaffold_958_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25168..25503)
DNA (336bp) protein (112aa)
Ammonium transporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7P1_PELHB
Ammonium transporter {ECO:0000313|EMBL:KKB07967.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ammonium transporter; K03320 ammonium transporter, Amt family
SCNpilot_expt_500_bf_scaffold_958_22
unknown

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25948..26037
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_958_23
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26472..26732
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AE12_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE57269.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_500_bf_scaffold_958_24
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27073..28296
DNA (1224bp) protein (408aa)
2-octaprenyl-6-methoxyphenol hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] rbh
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7N9_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB78693.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_958_25
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28305..28544)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7N8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30315.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein; K09791 hypothetical protein
SCNpilot_expt_500_bf_scaffold_958_26
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28544..29209)
DNA (666bp) protein (222aa)
Uncharacterized protein, similar to the N-terminal domain of Lon protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7N7_PELHB
Peptidase S16 {ECO:0000313|EMBL:KKB80562.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein; K07157
SCNpilot_expt_500_bf_scaffold_958_27
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29220..30161)
DNA (942bp) protein (314aa)
Thioredoxin domain-containing protein EC-YbbN n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7N6_PELHB rbh
Thioredoxin {ECO:0000313|EMBL:KKB78949.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
thioredoxin; K05838 putative thioredoxin rbh
SCNpilot_expt_500_bf_scaffold_958_28
BJP_08E140C01_Actinomycetales_67_18, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(30567..31202)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Micrococcus luteus SK58 RepID=D3LPG6_MICLU
putative NADH-flavin reductase; K07118
Tax=BJP_08E140C01_Actinomycetales_67_18
SCNpilot_expt_500_bf_scaffold_958_29
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31287..32189)
DNA (903bp) protein (301aa)
Gluconolactonase {ECO:0000313|EMBL:EPX87815.1}; EC=3.1.1.17 {ECO:0000313|EMBL:EPX87815.1};; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
gluconolactonase (EC:3.1.1.17) rbh
Gluconolactonase n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SCG9_9RHOB rbh
SCNpilot_expt_500_bf_scaffold_958_30
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32512..34344
DNA (1833bp) protein (611aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
PAS domain S-box protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZYB9_9PROT
Displaying items 1-30 of 38 in total

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