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SCNpilot_expt_500_bf_scaffold_963

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_963_1
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..411)
DNA (411bp) protein (137aa)
EAL domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN42_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKC40898.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_500_bf_scaffold_963_2
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(609..1196)
DNA (588bp) protein (196aa)
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RD91_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32885.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cytochrome oxidase biogenesis protein Sco1/SenC/PrrC copper metallochaperone; K07152
SCNpilot_expt_500_bf_scaffold_963_3
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1988..2137)
DNA (150bp) protein (50aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC61266.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_bf_scaffold_963_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2304..2537)
DNA (234bp) protein (78aa)
Cytoplasmic protein {ECO:0000313|EMBL:KKB07483.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_963_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2491..2988)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9X2_PELHB
Cytoplasmic protein {ECO:0000313|EMBL:KKB07483.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein; K09987 hypothetical protein
SCNpilot_expt_500_bf_scaffold_963_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3104..4126)
DNA (1023bp) protein (341aa)
Quinone oxidoreductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9X0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07482.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
quinone oxidoreductase
SCNpilot_expt_500_bf_scaffold_963_7
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4233..4415
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003689FE8
Uncharacterized protein {ECO:0000313|EMBL:KKB76056.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_963_8
unknown

Not on your lists

4523..4741
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_963_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5055..5579
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9W5_PELHB
Regulator of CtrA degradation {ECO:0000313|EMBL:KKB07480.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein; K13592 regulator of CtrA degradation
SCNpilot_expt_500_bf_scaffold_963_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5586..5906)
DNA (321bp) protein (107aa)
UPF0060 membrane protein Mesci_4759 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLJ2_MESCW
UPF0060 membrane protein VW29_01865 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein; K09771 hypothetical protein
SCNpilot_expt_500_bf_scaffold_963_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5973..6194)
DNA (222bp) protein (74aa)
50S ribosomal protein L31 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E15A21
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
rpmE; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
SCNpilot_expt_500_bf_scaffold_963_12
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6408..8225
DNA (1818bp) protein (606aa)
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9W3_PELHB rbh
ABC transporter {ECO:0000313|EMBL:KKB76052.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
lipid A export ATP-binding/permease protein MsbA; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_500_bf_scaffold_963_13
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8248..8961)
DNA (714bp) protein (238aa)
thiamin pyrophosphokinase; K00949 thiamine pyrophosphokinase [EC:2.7.6.2]
Thiamin pyrophosphokinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R953_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC34147.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_500_bf_scaffold_963_14
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9152..10159
DNA (1008bp) protein (336aa)
Thiamin ABC transporter, substrate-binding component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R954_PELHB rbh
Thiamine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB12574.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
thiamin ABC transporter, substrate-binding component; K02064 thiamine transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_963_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10257..11858
DNA (1602bp) protein (534aa)
Thiamin ABC transporter, transmembrane component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R955_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07478.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
thiamin ABC transporter, transmembrane component; K02063 thiamine transport system permease protein
SCNpilot_expt_500_bf_scaffold_963_16
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11842..12480
DNA (639bp) protein (213aa)
Thiamin ABC transporter, ATPase component / thiamine transport ATP-binding protein thiQ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R956_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB79618.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
thiamin ABC transporter ATPase component / thiamine transport ATP-binding protein thiQ; K02062 thiamine transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_963_17
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12490..14463)
DNA (1974bp) protein (658aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R957_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76005.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_963_18
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14512..15801)
DNA (1290bp) protein (430aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
purA; adenylosuccinate synthetase (EC:6.3.4.4)
PREDICTED: adenylosuccinate synthetase 1, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C12FB2 rbh
SCNpilot_expt_500_bf_scaffold_963_19
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15954..16898
DNA (945bp) protein (315aa)
Permease of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R959_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL29830.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
permease of the drug/metabolite transporter (DMT) superfamily
SCNpilot_expt_500_bf_scaffold_963_20
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16972..18549)
DNA (1578bp) protein (526aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
D-3-phosphoglycerate dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R960_PELHB rbh
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KKB76008.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_963_21
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18709..19890)
DNA (1182bp) protein (394aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
phosphoserine aminotransferase; K00831 phosphoserine aminotransferase [EC:2.6.1.52] rbh
Phosphoserine aminotransferase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XCT1_9RHIZ rbh
SCNpilot_expt_500_bf_scaffold_963_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20121..20879
DNA (759bp) protein (253aa)
Putative integral membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9X3_PELHB rbh
Membrane protein {ECO:0000313|EMBL:KKB07484.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative integral membrane protein; K07090 rbh
SCNpilot_expt_500_bf_scaffold_963_23
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20970..22769
DNA (1800bp) protein (600aa)
oligoendopeptidase F; K08602 oligoendopeptidase F [EC:3.4.24.-] rbh
Oligoendopeptidase F n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Y8_PELHB rbh
Oligoendopeptidase F {ECO:0000313|EMBL:KFL27947.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_bf_scaffold_963_24
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22821..22985
DNA (165bp) protein (55aa)
Bacterial aa3 type cytochrome c oxidase subunit IV {ECO:0000313|EMBL:KFC67685.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_bf_scaffold_963_25
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23052..24530
DNA (1479bp) protein (493aa)
NAD(P) transhydrogenase subunit alpha {ECO:0000256|PIRNR:PIRNR000203}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000203};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
NAD(P) transhydrogenase subunit alpha; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase subunit alpha n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Y6_PELHB
SCNpilot_expt_500_bf_scaffold_963_26
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24532..24840
DNA (309bp) protein (103aa)
pntA2; nicotinamide nucleotide transhydrogenase subunit alpha2 (EC:1.6.1.2); K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
Nicotinamide nucleotide transhydrogenase, subunit alpha2 n=5 Tax=Bradyrhizobium RepID=A4YMH8_BRASO
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:KKB07487.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_963_27
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24844..25230
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036243E6
Uncharacterized protein {ECO:0000313|EMBL:KFL29673.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
endoribonuclease L-PSP
SCNpilot_expt_500_bf_scaffold_963_28
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25242..26648
DNA (1407bp) protein (469aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
NAD(P) transhydrogenase subunit beta; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2] rbh
NAD(P) transhydrogenase subunit beta n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Y4_PELHB rbh
SCNpilot_expt_500_bf_scaffold_963_29
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26783..26956)
DNA (174bp) protein (58aa)
Protein SlyX homolog {ECO:0000256|HAMAP-Rule:MF_00715}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_963_30
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27099..27665
DNA (567bp) protein (189aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB07489.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
Displaying items 1-30 of 32 in total

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