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SCNpilot_expt_500_bf_scaffold_1667

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1667_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..3225
DNA (3225bp) protein (1075aa)
ykoU2; ATP-dependent DNA ligase YkoU (EC:6.5.1.1) rbh
UPI0003CFFAC9 related cluster n=1 Tax=unknown RepID=UPI0003CFFAC9 rbh
DNA ligase D {ECO:0000313|EMBL:ESZ14378.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_expt_500_bf_scaffold_1667_2
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3442..4248)
DNA (807bp) protein (269aa)
UPI0003D02C75 related cluster n=1 Tax=unknown RepID=UPI0003D02C75 rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
Ku78, Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen; K10979 DNA end-binding protein Ku rbh
SCNpilot_expt_500_bf_scaffold_1667_3
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4303..5298)
DNA (996bp) protein (332aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2U6_9RHIZ rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:KKB09274.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein; K02529 LacI family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_1667_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5438..6220
DNA (783bp) protein (261aa)
nagB; glucosamine-6-phosphate deaminase; K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6] rbh
glucosamine-6-phosphate deaminase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00035E1C65 rbh
Glucosamine-6-phosphate deaminase {ECO:0000313|EMBL:KKB10273.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_1667_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6213..6986
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MEA2_9RHIZ rbh
Sugar isomerase {ECO:0000313|EMBL:KKB09275.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
sugar isomerase
SCNpilot_expt_500_bf_scaffold_1667_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6983..8134
DNA (1152bp) protein (384aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25); K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] rbh
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2U3_9RHIZ rbh
SCNpilot_expt_500_bf_scaffold_1667_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8131..9402
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C6F3_9RHIZ rbh
Neutral/alkaline non-lysosomal ceramidase {ECO:0000313|EMBL:KKB09277.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1667_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9449..10753
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037FAFA8 rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB09278.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_1667_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10826..11713
DNA (888bp) protein (296aa)
Permease component of ABC-type sugar transporter n=1 Tax=Rhizobium sp. CF080 RepID=J2K1J7_9RHIZ rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB09279.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein; K02025 multiple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_1667_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11710..12573
DNA (864bp) protein (288aa)
ABC-type sugar transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2T9_9RHIZ rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB10274.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein; K02026 multiple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_1667_11
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12570..13820
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000363A215 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB85164.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_500_bf_scaffold_1667_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14447..14842
DNA (396bp) protein (132aa)
Sugar ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GSC6_9RHIZ
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB09281.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter-like protein; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_1667_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15543..15851
DNA (309bp) protein (103aa)
UPI0003CEAA49 related cluster n=1 Tax=unknown RepID=UPI0003CEAA49
Stress responsive protein {ECO:0000313|EMBL:KFL31609.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
stress responsive alpha-beta barrel domain-containing protein
SCNpilot_expt_500_bf_scaffold_1667_14
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15887..16624)
DNA (738bp) protein (246aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
arginyl-tRNA-protein transferase; K00685 arginine-tRNA-protein transferase [EC:2.3.2.8] rbh
Putative arginyl-tRNA--protein transferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R628_PELHB rbh
SCNpilot_expt_500_bf_scaffold_1667_15
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16742..17260)
DNA (519bp) protein (173aa)
RDD domain containing protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R630_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB84023.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
RDD domain-containing protein
SCNpilot_expt_500_bf_scaffold_1667_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17416..18354
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXH1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB09225.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
permease, DMT superfamily
SCNpilot_expt_500_bf_scaffold_1667_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18373..19368)
DNA (996bp) protein (332aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
porphobilinogen synthase; K01698 porphobilinogen synthase [EC:4.2.1.24] rbh
Delta-aminolevulinic acid dehydratase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R635_PELHB rbh
SCNpilot_expt_500_bf_scaffold_1667_18
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19465..19854
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R636_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB83131.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1667_19
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19864..20598)
DNA (735bp) protein (245aa)
Putative DNA binding protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U3C1_9DELT
DNA-binding protein {ECO:0000313|EMBL:KFL31616.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
DNA-binding protein
SCNpilot_expt_500_bf_scaffold_1667_20
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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20754..21173
DNA (420bp) protein (140aa)
Putative membrane protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1CXF9_MYXXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI64403.1}; TaxID=483219 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
SCNpilot_expt_500_bf_scaffold_1667_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21459..21968
DNA (510bp) protein (170aa)
Transcriptional regulator, MarR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R637_PELHB
MarR family transcriptional regulator {ECO:0000313|EMBL:KKB09227.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
transcriptional regulator, MarR family
SCNpilot_expt_500_bf_scaffold_1667_22
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22234..22728
DNA (495bp) protein (165aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X1Z0_OCHA4
Uncharacterized protein {ECO:0000313|EMBL:KKB81317.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
peptidoglycan-binding domain-containing protein
Displaying 22 items

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