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SCNpilot_expt_500_bf_scaffold_1675

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1675_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..850)
DNA (849bp) protein (283aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
acetyl-coenzyme A synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV1_PELHB
SCNpilot_expt_500_bf_scaffold_1675_2
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1006..1608
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC32912.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1675_3
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1775..3106)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV4_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC32911.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1675_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3103..4272)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09945.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1675_5
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4384..5079)
DNA (696bp) protein (232aa)
Integral membrane protein TerC n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F4V9_9RHIZ
Membrane protein {ECO:0000313|EMBL:KKB79931.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
integral membrane protein TerC
SCNpilot_expt_500_bf_scaffold_1675_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5259..6203)
DNA (945bp) protein (315aa)
Probable catechol 1,2-dioxygenase n=1 Tax=Rhodococcus sp. EsD8 RepID=N1M1I3_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:KKB09946.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
catechol 1,2-dioxygenase
SCNpilot_expt_500_bf_scaffold_1675_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6696..6896)
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB09947.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_1675_8
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7177..8289
DNA (1113bp) protein (371aa)
Histidinol-phosphate aminotransferase {ECO:0000313|EMBL:KFL28928.1}; EC=2.6.1.9 {ECO:0000313|EMBL:KFL28928.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] rbh
Aminotransferase n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WX53_RHOS5 rbh
SCNpilot_expt_500_bf_scaffold_1675_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8274..8915)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL28929.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1675_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8925..9221)
DNA (297bp) protein (99aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL28929.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_bf_scaffold_1675_11
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9253..9702)
DNA (450bp) protein (150aa)
GCN5-related N-acetyltransferase n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9W4U4_METEP
Uncharacterized protein {ECO:0000313|EMBL:KFL28930.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
N-acetyltransferase GCN5
SCNpilot_expt_500_bf_scaffold_1675_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9757..10965)
DNA (1209bp) protein (403aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REW0_PELHB
SCNpilot_expt_500_bf_scaffold_1675_13
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10962..11294)
DNA (333bp) protein (111aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVS1_9RHIZ
SCNpilot_expt_500_bf_scaffold_1675_14
unknown

Not on your lists

comp(11410..11532)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1675_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11636..12058)
DNA (423bp) protein (141aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP51881.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_500_bf_scaffold_1675_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12067..12951)
DNA (885bp) protein (295aa)
Phenazine biosynthesis protein PhzF like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REW1_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB09953.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
phenazine biosynthesis protein PhzF like protein; K06998 rbh
SCNpilot_expt_500_bf_scaffold_1675_17
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12948..13445)
DNA (498bp) protein (166aa)
UPI0003CEA14B related cluster n=1 Tax=unknown RepID=UPI0003CEA14B
UPF0303 protein VW35_05550 {ECO:0000256|HAMAP-Rule:MF_00761}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1675_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13445..13912)
DNA (468bp) protein (156aa)
aldehyde-activating protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI00037A9BFE
Uncharacterized protein {ECO:0000313|EMBL:KKB09955.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_500_bf_scaffold_1675_19
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14029..15051)
DNA (1023bp) protein (341aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ketol-acid reductoisomerase; K00053 ketol-acid reductoisomerase [EC:1.1.1.86] rbh
Ketol-acid reductoisomerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REW7_PELHB rbh
SCNpilot_expt_500_bf_scaffold_1675_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15079..15726)
DNA (648bp) protein (216aa)
Putative transcriptional regulator n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EUH2_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:KKB09957.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
transcriptional regulator, TetR family
SCNpilot_expt_500_bf_scaffold_1675_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15892..16863
DNA (972bp) protein (324aa)
Transcription regulator (Contains diacylglycerol kinase catalytic domain) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFV2_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB08585.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
transcription regulator (contains diacylglycerol kinase catalytic domain); K07029 rbh
SCNpilot_expt_500_bf_scaffold_1675_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16860..17684
DNA (825bp) protein (275aa)
Putative phosphohydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFV3_PELHB rbh
Metallophosphoesterase {ECO:0000313|EMBL:KKB08584.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative phosphohydrolase rbh
SCNpilot_expt_500_bf_scaffold_1675_23
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17812..19044
DNA (1233bp) protein (411aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
pepT; peptidase T (EC:3.4.11.4); K01258 tripeptide aminopeptidase [EC:3.4.11.4] rbh
Aminopolypeptidase protein n=2 Tax=Rhizobium etli RepID=Q2K0P5_RHIEC rbh
SCNpilot_expt_500_bf_scaffold_1675_24
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19050..20135)
DNA (1086bp) protein (362aa)
Metal dependent phosphohydrolase with a response regulator receiver domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFH9_PELHB
metal dependent phosphohydrolase
Metal dependent phosphohydrolase with a response regulator receiver domain protein {ECO:0000313|EMBL:AEQ52981.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_500_bf_scaffold_1675_25
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20268..20471
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB09961.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_1675_26
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20468..21352)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037E8667 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB09962.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
dienelactone hydrolase-like enzyme
SCNpilot_expt_500_bf_scaffold_1675_27
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21497..22201
DNA (705bp) protein (235aa)
oxidoreductase n=1 Tax=Rhizobium leguminosarum RepID=UPI000371ED92
NADH:flavin oxidoreductase / NADH oxidase {ECO:0000313|EMBL:KKB11474.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
NADH:flavin oxidoreductase
SCNpilot_expt_500_bf_scaffold_1675_28
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22191..22562
DNA (372bp) protein (124aa)
oxidoreductase n=1 Tax=Rhizobium leguminosarum RepID=UPI000371ED92
NADH:flavin oxidoreductase / NADH oxidase {ECO:0000313|EMBL:KKB09963.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
NADH:flavin oxidoreductase
SCNpilot_expt_500_bf_scaffold_1675_29
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22612..23034)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000376AB15
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
K potassium transporter; K03549 KUP system potassium uptake protein
SCNpilot_expt_500_bf_scaffold_1675_30
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23043..23942)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000376AB15
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
potassium uptake protein Kup; K03549 KUP system potassium uptake protein
Displaying 30 items

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