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SCNpilot_expt_500_bf_scaffold_3331

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3331_1
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..296
DNA (294bp) protein (98aa)
Chemotaxis protein methyltransferase CheR {ECO:0000313|EMBL:EYD74339.1}; EC=2.1.1.80 {ECO:0000313|EMBL:EYD74339.1};; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
histidine kinase n=1 Tax=Methylocystis rosea RepID=UPI000382B403
sensory transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_3331_2
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(530..1393)
DNA (864bp) protein (288aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
xylose isomerase; K01805 xylose isomerase [EC:5.3.1.5]
Xylose isomerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H1_PELHB
SCNpilot_expt_500_bf_scaffold_3331_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1333..1797)
DNA (465bp) protein (155aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
xylose isomerase; K01805 xylose isomerase [EC:5.3.1.5]
Xylose isomerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H1_PELHB
SCNpilot_expt_500_bf_scaffold_3331_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1794..3257)
DNA (1464bp) protein (488aa)
xylulose kinase; K00854 xylulokinase [EC:2.7.1.17]
Xylulose kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H2_PELHB
Xylulose kinase {ECO:0000313|EMBL:KKB07863.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_3331_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3836..4804)
DNA (969bp) protein (323aa)
Putative xylose regulator from LacI family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08327.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative xylose regulator from LacI family; K02529 LacI family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3331_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4955..5965
DNA (1011bp) protein (337aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
aldose 1-epimerase; K01785 aldose 1-epimerase [EC:5.1.3.3] rbh
Aldose 1-epimerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGX9_PELHB rbh
SCNpilot_expt_500_bf_scaffold_3331_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6074..6757
DNA (684bp) protein (228aa)
Transcriptional regulator, DeoR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFZ0_PELHB
DNA-binding protein {ECO:0000313|EMBL:KKB07861.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
DeoR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3331_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6958..9102)
DNA (2145bp) protein (715aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
polyribonucleotide nucleotidyltransferase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] rbh
Polyribonucleotide nucleotidyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9A0_PELHB rbh
SCNpilot_expt_500_bf_scaffold_3331_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9415..9684)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HTN9_9RHIZ
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
SCNpilot_expt_500_bf_scaffold_3331_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9829..11547)
DNA (1719bp) protein (573aa)
Chemotaxis protein methyltransferase CheR n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R998_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB07921.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
chemotaxis protein CheR rbh
SCNpilot_expt_500_bf_scaffold_3331_11
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11660..11920
DNA (261bp) protein (87aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJY3_9RHIZ
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
Displaying 11 items

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