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SCNpilot_expt_500_bf_scaffold_3932

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3932_1
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..393
DNA (393bp) protein (131aa)
O-antigen polymerase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PRD4_9RHIZ
Polymerase {ECO:0000313|EMBL:KFL29957.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
exoq1; putative polysaccharide polymerase RF_0568
SCNpilot_expt_500_bf_scaffold_3932_2
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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652..1179
DNA (528bp) protein (176aa)
Polysaccharide deacetylase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11EC3_MESSB
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ABG64252.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_500_bf_scaffold_3932_3
bacterium YEK0313, Bacteria

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comp(1183..2565)
DNA (1383bp) protein (461aa)
Putative glycosyl transferase n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CGM1_METED
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase {ECO:0000313|EMBL:CEJ14421.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
glycosyl transferase
SCNpilot_expt_500_bf_scaffold_3932_4
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2875..3720
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D1G4_RHILU
Uncharacterized protein {ECO:0000313|EMBL:EKJ95450.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3932_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3748..4014
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U9E8_RHIRD
Acyl carrier protein {ECO:0000313|EMBL:CDN93810.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Acyl carrier protein
SCNpilot_expt_500_bf_scaffold_3932_6
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4352..5509
DNA (1158bp) protein (386aa)
Long-chain-fatty-acid--CoA ligase LcfB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D406_9RHIZ
fadD; long-chain fatty acid-CoA ligase
AMP-dependent synthetase {ECO:0000313|EMBL:KJF70095.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_expt_500_bf_scaffold_3932_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5496..6788
DNA (1293bp) protein (431aa)
Diaminopimelate decarboxylase {ECO:0000313|EMBL:AHK01527.1}; EC=4.1.1.20 {ECO:0000313|EMBL:AHK01527.1};; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] rbh
Diaminopimelate decarboxylase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HAU5_RHIRD rbh
SCNpilot_expt_500_bf_scaffold_3932_8
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7013..7588
DNA (576bp) protein (192aa)
Cytochrome c551 n=1 Tax=Ketogulonicigenium vulgare RepID=Q76KD4_9RHOB
Cytochrome c551 {ECO:0000313|EMBL:BAC98338.1}; TaxID=92945 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare.;"
cytochrome c551
SCNpilot_expt_500_bf_scaffold_3932_9
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7658..9421
DNA (1764bp) protein (588aa)
Quino(Hemo)protein alcohol dehydrogenase, PQQ-dependent n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGN9_PELHB rbh
ATP-binding protein {ECO:0000313|EMBL:KKB77566.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
quino(hemo)protein alcohol dehydrogenase, PQQ-dependent rbh
SCNpilot_expt_500_bf_scaffold_3932_10
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9507..10352
DNA (846bp) protein (282aa)
Extracellular solute-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGP0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC35907.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
ABC transporter substrate-binding protein
SCNpilot_expt_500_bf_scaffold_3932_11
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10349..10933
DNA (585bp) protein (195aa)
Peptidase M50 n=2 Tax=Ketogulonicigenium vulgare RepID=E3EZH4_KETVY
Uncharacterized protein {ECO:0000313|EMBL:KKB77564.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
Peptidase M50
Displaying 11 items

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