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SCNpilot_expt_500_bf_scaffold_4283

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4283_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..120)
DNA (120bp) protein (40aa)
Lactate dehydrogenase {ECO:0000313|EMBL:KKB07547.1}; EC=1.1.2.3 {ECO:0000313|EMBL:KKB07547.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
FMN-dependent alpha-hydroxy acid dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
FMN-dependent alpha-hydroxy acid dehydrogenase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TNA6_MESCW
SCNpilot_expt_500_bf_scaffold_4283_2
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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309..782
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037B9BCF
DNA-binding protein {ECO:0000313|EMBL:KKB77157.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
dps; DNA starvation/stationary phase protection protein Dps; K04047 starvation-inducible DNA-binding protein
SCNpilot_expt_500_bf_scaffold_4283_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1399..4536
DNA (3138bp) protein (1046aa)
glutamate synthase (NADPH) large chain; K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase (NADPH) large chain n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC94_PELHB
Glutamate synthase {ECO:0000313|EMBL:KFL29214.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_bf_scaffold_4283_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4562..5788
DNA (1227bp) protein (409aa)
glutamate synthase; K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
glutamate synthase n=1 Tax=Sinorhizobium medicae RepID=UPI00037A22CB
Glutamate synthase {ECO:0000313|EMBL:KKB77187.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_4283_5
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5749..6057
DNA (309bp) protein (103aa)
Glutamate synthase [NADPH] large chain n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RDK8_9RHIZ
Glutamate synthase {ECO:0000313|EMBL:KFL29214.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glutamate synthase (NADPH) large chain
SCNpilot_expt_500_bf_scaffold_4283_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6057..6659
DNA (603bp) protein (201aa)
gstA2; glutathione S-transferase (EC:2.5.1.18); K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A79BB
Glutathione S-transferase {ECO:0000313|EMBL:KFC62108.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_bf_scaffold_4283_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6669..8096
DNA (1428bp) protein (476aa)
Glutamate synthase {ECO:0000313|EMBL:KKB07535.1}; EC=1.4.1.13 {ECO:0000313|EMBL:KKB07535.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
glutamate synthase (NADPH) small chain; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14] rbh
Glutamate synthase (NADPH) small chain n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC96_PELHB rbh
SCNpilot_expt_500_bf_scaffold_4283_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8211..9278)
DNA (1068bp) protein (356aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
quinolinate synthetase; K03517 quinolinate synthase [EC:2.5.1.72]
Quinolinate synthase A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCV2_PELHB
SCNpilot_expt_500_bf_scaffold_4283_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9405..10040
DNA (636bp) protein (212aa)
Keto-deoxy-phosphogluconate aldolase {ECO:0000313|EMBL:KFL29143.1}; EC=4.1.2.14 {ECO:0000313|EMBL:KFL29143.1};; EC=4.1.3.16 {ECO:0000313|EMBL:KFL29143.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
4-hydroxy-2-ketovalerate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16] rbh
4-hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCV3_PELHB rbh
SCNpilot_expt_500_bf_scaffold_4283_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10175..11167
DNA (993bp) protein (331aa)
lysophospholipase L2; K01048 lysophospholipase [EC:3.1.1.5] rbh
Lysophospholipase L2 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC91_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB07532.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_4283_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11389..12339)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWQ7_RHOCS rbh
Enterochelin esterase {ECO:0000313|EMBL:KKB07516.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_4283_12
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12437..12583)
DNA (147bp) protein (49aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMA4_9RHIZ
ATP-binding protein {ECO:0000313|EMBL:KFL29681.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ATP/GTP-binding site motif A (P-loop)
Displaying 12 items

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