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SCNpilot_expt_500_bf_scaffold_4744

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4744_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..2187)
DNA (2187bp) protein (729aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8K0_PELHB
SCNpilot_expt_500_bf_scaffold_4744_2
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2432..3550)
DNA (1119bp) protein (373aa)
DNA replication and repair protein RecF n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8K1_PELHB
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
DNA recombination and repair protein RecF; K03629 DNA replication and repair protein RecF
SCNpilot_expt_500_bf_scaffold_4744_3
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3764..4888)
DNA (1125bp) protein (375aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] rbh
DNA polymerase III subunit beta n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8M1_PELHB rbh
SCNpilot_expt_500_bf_scaffold_4744_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5052..5804)
DNA (753bp) protein (251aa)
O-acetylhomoserine aminocarboxypropyltransferase {ECO:0000313|EMBL:KKB07866.1}; EC=2.5.1.49 {ECO:0000313|EMBL:KKB07866.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
homocysteine synthase; K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine (Thiol)-lyase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRP5_9SPHN
SCNpilot_expt_500_bf_scaffold_4744_5
unknown

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5808..5924
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4744_6
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5875..6264)
DNA (390bp) protein (130aa)
O-acetylhomoserine aminocarboxypropyltransferase {ECO:0000313|EMBL:KFL30086.1}; EC=2.5.1.49 {ECO:0000313|EMBL:KFL30086.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
O-acetylhomoserine/O-acetylserine sulfhydrylase (EC:2.5.1.47); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine (Thiol)-lyase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRP5_9SPHN
SCNpilot_expt_500_bf_scaffold_4744_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6655..7128)
DNA (474bp) protein (158aa)
Universal stress protein A n=2 Tax=Labrenzia RepID=U7GHS3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB07872.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
universal stress protein UspA-related nucleotide-binding protein
SCNpilot_expt_500_bf_scaffold_4744_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7146..8189)
DNA (1044bp) protein (348aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] rbh
Tryptophan--tRNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H9_PELHB rbh
SCNpilot_expt_500_bf_scaffold_4744_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8258..9820)
DNA (1563bp) protein (521aa)
Proposed peptidoglycan lipid II flippase MurJ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H8_PELHB
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
proposed peptidoglycan lipid II flippase MurJ; K03980 virulence factor
Displaying 9 items

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