ggKbase home page

SCNpilot_expt_500_bf_scaffold_2099

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2099_1
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..430)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11IN6_MESSB
Putative membrane protein {ECO:0000313|EMBL:KFC61357.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2099_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(610..855)
DNA (246bp) protein (82aa)
TadE-like protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11IN7_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KFL24877.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
TadE-like protein
SCNpilot_expt_500_bf_scaffold_2099_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

987..1751
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B325A6
Uncharacterized protein {ECO:0000313|EMBL:KKB77854.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2099_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1775..2863)
DNA (1089bp) protein (363aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;
phosphoribosylaminoimidazole carboxylase ATPase subunit; K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] rbh
Phosphoribosylaminoimidazole carboxylase ATPase subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9X9_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2099_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2868..3359)
DNA (492bp) protein (164aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
phosphoribosylaminoimidazole carboxylase catalytic subunit; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9X8_PELHB
SCNpilot_expt_500_bf_scaffold_2099_6
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3433..3648)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9X5_PELHB
Small protein containing a coiled-coil domain containing protein {ECO:0000313|EMBL:KKB77182.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2099_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4131..5525
DNA (1395bp) protein (465aa)
Response regulatory protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Z0_PELHB
Fis family transcriptional regulator {ECO:0000313|EMBL:KKB07498.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
response regulatory protein
SCNpilot_expt_500_bf_scaffold_2099_8
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5676..6356
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031A19B3
Putative outer-membrane immunogenic protein precur sor {ECO:0000313|EMBL:CDP53858.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
porin
SCNpilot_expt_500_bf_scaffold_2099_9
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6551..8257
DNA (1707bp) protein (569aa)
L,D-transpeptidase YcbB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Z2_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB77173.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
L,D-transpeptidase YcbB rbh
SCNpilot_expt_500_bf_scaffold_2099_10
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8517..10220
DNA (1704bp) protein (568aa)
Putative exported protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Z3_PELHB rbh
Putative exported protein {ECO:0000313|EMBL:KFC69744.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2099_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10380..12251
DNA (1872bp) protein (624aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
1-deoxy-d-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] rbh
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Z4_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2099_12
unknown

Not on your lists

12340..12567
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2099_13
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12724..12978)
DNA (255bp) protein (85aa)
UPF0335 protein MicloDRAFT_00038980 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTP5_9RHIZ
UPF0335 protein VE26_12165 {ECO:0000256|HAMAP-Rule:MF_00797}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2099_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13249..13794
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Z6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07500.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2099_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13791..15230
DNA (1440bp) protein (480aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40] rbh
Pyruvate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Z7_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2099_16
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15809..16219)
DNA (411bp) protein (137aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB76952.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_2099_17
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16312..16437)
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Z8_PELHB
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
SCNpilot_expt_500_bf_scaffold_2099_18
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16623..17648)
DNA (1026bp) protein (342aa)
Oligopeptide transport ATP-binding protein OppF n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA00_PELHB rbh
Oligopeptide transport ATP-binding protein OppF {ECO:0000313|EMBL:KFC69766.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
oligopeptide transport ATP-binding protein OppF; K10823 oligopeptide transport system ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_2099_19
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17719..18585)
DNA (867bp) protein (289aa)
Oligopeptide ABC transporter ATP-binding protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I5F1_9RHIZ
Oligopeptide transporter ATP-binding component {ECO:0000313|EMBL:KKB07505.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
oppD; oligopeptide ABC transporter, ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_2099_20
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18587..19507)
DNA (921bp) protein (307aa)
peptide ABC transporter permease n=1 Tax=Rhizobium mongolense RepID=UPI0003B48488
Peptide ABC transporter permease {ECO:0000313|EMBL:KKB10965.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC transporter permease; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_500_bf_scaffold_2099_21
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19507..20430)
DNA (924bp) protein (308aa)
ABC transporter n=1 Tax=Aureimonas ureilytica RepID=UPI0003665265 rbh
Oligopeptide transporter permease {ECO:0000313|EMBL:KKB10954.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
transmembrane component of ABC transporter protein; K15581 oligopeptide transport system permease protein
SCNpilot_expt_500_bf_scaffold_2099_22
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20536..22152)
DNA (1617bp) protein (539aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000360ECA3 rbh
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL29206.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
oppA; oligopeptide ABC transporter; K15580 oligopeptide transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_2099_23
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22507..22668)
DNA (162bp) protein (54aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC69771.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_bf_scaffold_2099_24
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22665..23948)
DNA (1284bp) protein (428aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KKB07509.1}; EC=2.3.1.9 {ECO:0000313|EMBL:KKB07509.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
3-ketoacyl-CoA thiolase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
3-ketoacyl-CoA thiolase / acetyl-CoA acetyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA05_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2099_25
unknown

Not on your lists

comp(23941..24129)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2099_26
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24129..26090)
DNA (1962bp) protein (654aa)
alpha-subunit of fatty acid oxidation complex; K01782 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] rbh
Alpha-subunit of fatty acid oxidation complex n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA06_PELHB rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KFL29204.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_bf_scaffold_2099_27
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26243..27679)
DNA (1437bp) protein (479aa)
butyryl-CoA dehydrogenase; K06445 acyl-CoA dehydrogenase [EC:1.3.99.-]
Butyryl-CoA dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA07_PELHB
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KKB08250.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2099_28
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27640..28641)
DNA (1002bp) protein (334aa)
butyryl-CoA dehydrogenase; K06445 acyl-CoA dehydrogenase [EC:1.3.99.-]
Butyryl-CoA dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA07_PELHB
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFL29203.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_bf_scaffold_2099_29
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29061..30773
DNA (1713bp) protein (571aa)
long-chain-fatty-acid--CoA ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] rbh
Long-chain-fatty-acid--CoA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA08_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB77146.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_2099_30
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30770..31162
DNA (393bp) protein (131aa)
Putative transcriptional regulator LiuR of leucine degradation pathway, MerR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA09_PELHB
MerR family transcriptional regulator {ECO:0000313|EMBL:KKB07512.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative transcriptional regulator LiuR of leucine degradation pathway, MerR family
Displaying items 1-30 of 34 in total

View Taxonomy