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SCNpilot_expt_500_bf_scaffold_2469

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2469_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..833)
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMA4_9RHIZ
ATP-binding protein {ECO:0000313|EMBL:KKB07525.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein; K06915
SCNpilot_expt_500_bf_scaffold_2469_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(934..1569)
DNA (636bp) protein (212aa)
Methyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REQ7_PELHB
SAM-dependent methyltransferase {ECO:0000313|EMBL:KKB10985.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
methyltransferase
SCNpilot_expt_500_bf_scaffold_2469_3
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1663..2553
DNA (891bp) protein (297aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BBX1_9RHOB
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EDZ45956.1}; TaxID=439496 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales bacterium Y4I.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_2469_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2817..3272)
DNA (456bp) protein (152aa)
Heat shock protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC92_PELHB
Molecular chaperone {ECO:0000313|EMBL:KKB77158.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
heat shock protein; K04080 molecular chaperone IbpA
SCNpilot_expt_500_bf_scaffold_2469_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3658..4935)
DNA (1278bp) protein (426aa)
Myo-inositol 2-dehydrogenase 1 n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9Q799_9RHOB rbh
Dehydrogenase {ECO:0000313|EMBL:KKB07521.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
oxidoreductase domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_2469_6
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5184..5819
DNA (636bp) protein (212aa)
Transcriptional regulator n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9QW21_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB76065.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
putative transcriptional regulator, GntR Family
SCNpilot_expt_500_bf_scaffold_2469_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5847..6713)
DNA (867bp) protein (289aa)
Galactose mutarotase-like enzyme n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0BZ61_RHILT rbh
Aldose epimerase {ECO:0000313|EMBL:KKB07526.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative aldose 1-epimerase rbh
SCNpilot_expt_500_bf_scaffold_2469_8
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6845..9325
DNA (2481bp) protein (827aa)
ATP-dependent helicase HrpB; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13] rbh
ATP-dependent helicase HrpB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8M9_PELHB rbh
ATP-dependent helicase {ECO:0000313|EMBL:KKB77169.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_2469_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9402..12308)
DNA (2907bp) protein (969aa)
Peptidase M16C associated domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCM7_PELHB rbh
Peptidase M16 {ECO:0000313|EMBL:KKB07518.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
peptidase M16C associated domain protein; K06972 rbh
SCNpilot_expt_500_bf_scaffold_2469_10
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12579..12881
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3HKJ4_RHOS4
Uncharacterized protein {ECO:0000313|EMBL:KKB10601.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein; K09803 hypothetical protein
SCNpilot_expt_500_bf_scaffold_2469_11
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12919..13620
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9M4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76062.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2469_12
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13655..14626)
DNA (972bp) protein (324aa)
Aldo/keto reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REI2_PELHB rbh
Aldo/keto reductase {ECO:0000313|EMBL:KKC33661.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
aldo/keto reductase rbh
SCNpilot_expt_500_bf_scaffold_2469_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14623..16092)
DNA (1470bp) protein (490aa)
ABC-type transport system, permease and ATPase components n=1 Tax=Burkholderia cenocepacia PC184 RepID=A2W1A3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KFL29677.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter-like protein
SCNpilot_expt_500_bf_scaffold_2469_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16968..17471
DNA (504bp) protein (168aa)
mRNA 3-end processing factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY4_PELHB
Beta-lactamase {ECO:0000313|EMBL:KKB07515.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
mRNA 3-end processing factor; K07577 putative mRNA 3-end processing factor
SCNpilot_expt_500_bf_scaffold_2469_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17565..18287
DNA (723bp) protein (241aa)
ATP-dependent DNA ligase LigC; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase LigC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY5_PELHB
ATP-dependent DNA ligase {ECO:0000313|EMBL:KKB07514.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
Displaying 15 items

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