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SCNpilot_expt_500_bf_scaffold_2524

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2524_1
unknown

Not on your lists

comp(3..329)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2524_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(363..1640)
DNA (1278bp) protein (426aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLM3_9RHIZ rbh
ABC transporter permease {ECO:0000313|EMBL:KKB07301.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
inner-membrane translocator; K10547 putative multiple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_2524_3
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1637..3118)
DNA (1482bp) protein (494aa)
ABC-type sugar transport system, ATPase component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KVY8_MESAW rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB07302.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC-type sugar transport system, ATPase component rbh
SCNpilot_expt_500_bf_scaffold_2524_4
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3226..3387)
DNA (162bp) protein (54aa)
UPI0003CDE9EE related cluster n=1 Tax=unknown RepID=UPI0003CDE9EE
L-arabinose-binding periplasmic protein AraF {ECO:0000313|EMBL:KFC62546.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
sugar ABC transporter substrate-binding protein; K10546 putative multiple sugar transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_2524_5
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3381..4235)
DNA (855bp) protein (285aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000366F059
L-arabinose-binding periplasmic protein AraF {ECO:0000313|EMBL:KFC62546.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
periplasmic protein/LacI transcriptional regulator; K10546 putative multiple sugar transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_2524_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4449..5525)
DNA (1077bp) protein (359aa)
Xylose ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLM1_9RHIZ rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB08216.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
sugar ABC transporter substrate-binding protein; K10546 putative multiple sugar transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_2524_7
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5967..6758
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00031A5C28
Transcriptional regulator, GntR family {ECO:0000313|EMBL:KFC62544.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
GntR family transcriptional regulator; K05799 GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
SCNpilot_expt_500_bf_scaffold_2524_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7014..10292
DNA (3279bp) protein (1093aa)
UPI0003CE02DC related cluster n=1 Tax=unknown RepID=UPI0003CE02DC rbh
Large protein containing transglutaminase-like domain protein {ECO:0000313|EMBL:KFC62534.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2524_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10296..12707
DNA (2412bp) protein (804aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07311.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2524_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12713..13591
DNA (879bp) protein (293aa)
Transglutaminase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FFV2_9RHIZ
Transglutaminase {ECO:0000313|EMBL:KKB07312.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
protein containing transglutaminase-like domain cysteine protease
SCNpilot_expt_500_bf_scaffold_2524_11
unknown

Not on your lists

13688..13858
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2524_12
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13976..14134
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9D6_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:KFC62530.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2524_13
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14214..14573
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Bartonella tamiae RepID=J1K3K9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB80245.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2524_14
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14862..15998)
DNA (1137bp) protein (379aa)
PAS domain S-box n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HTR7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKC36559.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
exsG; putative sensor histidine kinase
SCNpilot_expt_500_bf_scaffold_2524_15
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16069..16476)
DNA (408bp) protein (136aa)
Signal transduction histidine kinase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F4N9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB84229.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_2524_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16561..17481)
DNA (921bp) protein (307aa)
Diacylglycerol kinase catalytic region n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F868_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB07314.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein; K07029
SCNpilot_expt_500_bf_scaffold_2524_17
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17486..18874)
DNA (1389bp) protein (463aa)
Sensor histidine kinase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1WUQ5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB80247.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
sensor histidine kinase rbh
SCNpilot_expt_500_bf_scaffold_2524_18
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18979..19671)
DNA (693bp) protein (231aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI00037F6CE0
Uncharacterized protein {ECO:0000313|EMBL:KKC32139.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2524_19
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19845..20237
DNA (393bp) protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB84288.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_500_bf_scaffold_2524_20
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20279..20833)
DNA (555bp) protein (185aa)
RNA polymerase sigma factor n=2 Tax=Bartonella tamiae RepID=J0R2G2_9RHIZ
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rpoE; RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_2524_21
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20840..21064)
DNA (225bp) protein (75aa)
RNA polymerase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003B35CA8
Uncharacterized protein {ECO:0000313|EMBL:KFC62523.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_bf_scaffold_2524_22
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21218..22012
DNA (795bp) protein (265aa)
Response regulator receiver protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WYA9_OCHA4 rbh
Two-component response regulator {ECO:0000313|EMBL:KKB80252.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
two-component response regulator rbh
SCNpilot_expt_500_bf_scaffold_2524_23
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22115..23254)
DNA (1140bp) protein (380aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I2_PELHB
Succinylglutamate desuccinylase {ECO:0000313|EMBL:KKB80259.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
succinylglutamate desuccinylase/aspartoacylase; K06987
SCNpilot_expt_500_bf_scaffold_2524_24
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23265..23552)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI000364D90D
Uncharacterized protein {ECO:0000313|EMBL:KFL30424.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2524_25
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23578..24312)
DNA (735bp) protein (245aa)
Histidine ABC transporter, permease protein HisM n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I1_PELHB rbh
Histidine ABC transporter permease {ECO:0000313|EMBL:KKB07324.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
histidine ABC transporter permease HisM; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_2524_26
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24312..24752)
DNA (441bp) protein (147aa)
ABC transporter permease n=1 Tax=Leucothrix mucor RepID=UPI0003B68F48
ABC transporter permease {ECO:0000313|EMBL:KKB07323.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter permease, HisMQ family; K02029 polar amino acid transport system permease protein
SCNpilot_expt_500_bf_scaffold_2524_27
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25166..25882)
DNA (717bp) protein (239aa)
His/Glu/Gln/Arg/opine family ABC transporter, periplasmic His/Glu/Gln/Arg/opine family-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H9_PELHB rbh
Amino acid ABC transporter {ECO:0000313|EMBL:KKB07322.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
His/Glu/Gln/Arg/opine family ABC transporter substrate-binding protein; K02030 polar amino acid transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_2524_28
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25947..26744)
DNA (798bp) protein (266aa)
histidine ABC transporter ATP-binding protein HisP; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21] rbh
Histidine ABC transporter, ATP-binding protein HisP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H8_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB08220.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2524_29
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26904..27695
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVW0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB07321.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2524_30
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27766..27930)
DNA (165bp) protein (55aa)
membrane protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036C4DE0
UPF0391 membrane protein VW35_07535 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
Displaying items 1-30 of 64 in total

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