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SCNpilot_expt_500_bf_scaffold_2914

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2914_1
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(303..2411)
DNA (2109bp) protein (703aa)
exodeoxyribonuclease V; K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] rbh
Uncharacterized protein n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z717_9NEIS rbh
Viral (Super1) RNA helicase family protein {ECO:0000313|EMBL:KKB69258.1}; TaxID=1249470 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR1079.;"
SCNpilot_expt_500_bf_scaffold_2914_2
Marinobacter similis, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2408..2860)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6CLH2_PSEST
Uncharacterized protein {ECO:0000313|EMBL:AHI28015.1}; TaxID=1420916 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter similis.;"
SCNpilot_expt_500_bf_scaffold_2914_3
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2860..3336)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UCK2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAP90983.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2914_4
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3333..5654)
DNA (2322bp) protein (774aa)
Uncharacterized protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UCK1_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EAP90982.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2914_5
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5767..7095)
DNA (1329bp) protein (443aa)
Site-specific recombinase, phage integrase family protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UCK0_9RHOB rbh
Site-specific recombinase, phage integrase family protein {ECO:0000313|EMBL:EAP90981.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
phage integrase family site-specific recombinase
SCNpilot_expt_500_bf_scaffold_2914_6
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7154..8380)
DNA (1227bp) protein (409aa)
Site-specific recombinase, phage integrase family protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UCJ9_9RHOB rbh
Site-specific recombinase, phage integrase family protein {ECO:0000313|EMBL:EAP90980.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
phage integrase family site-specific recombinase
SCNpilot_expt_500_bf_scaffold_2914_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8723..9892
DNA (1170bp) protein (390aa)
Putative diguanylate cyclase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BZ43_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KFL32565.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative diguanylate cyclase
SCNpilot_expt_500_bf_scaffold_2914_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9900..10901)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ0_PELHB
ABC transporter {ECO:0000313|EMBL:KKB09490.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2914_9
unknown

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11045..11455
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2914_10
unknown

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comp(11662..11832)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2914_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12181..14190
DNA (2010bp) protein (670aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
Topoisomerase IV subunit B; K02622 topoisomerase IV subunit B [EC:5.99.1.-] rbh
DNA topoisomerase 4 subunit B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ3_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2914_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14473..15882
DNA (1410bp) protein (470aa)
ATP-dependent RNA helicase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09487.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ATP-dependent RNA helicase
SCNpilot_expt_500_bf_scaffold_2914_13
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16436..17077
DNA (642bp) protein (214aa)
Diguanylate cyclase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10309.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
diguanylate cyclase; K13590 diguanylate cyclase
SCNpilot_expt_500_bf_scaffold_2914_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17129..18409)
DNA (1281bp) protein (427aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] rbh
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00038233F0 rbh
SCNpilot_expt_500_bf_scaffold_2914_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18529..18909)
DNA (381bp) protein (127aa)
Iron binding protein SufA for iron-sulfur cluster assembly n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ6_PELHB
FeS assembly scaffold SufA {ECO:0000313|EMBL:KKB09485.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
iron binding protein SufA for iron-sulfur cluster assembly; K13628 iron-sulfur cluster assembly protein
SCNpilot_expt_500_bf_scaffold_2914_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18964..19335)
DNA (372bp) protein (124aa)
FeS assembly SUF system protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ7_PELHB
FeS assembly SUF system protein {ECO:0000313|EMBL:KKB09484.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
FeS assembly SUF system protein
SCNpilot_expt_500_bf_scaffold_2914_17
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19346..20566)
DNA (1221bp) protein (407aa)
Cysteine desulfurase {ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|SAAS:SAAS00062216};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] rbh
Cysteine desulfurase, SufS subfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ8_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2914_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20645..21853)
DNA (1209bp) protein (403aa)
Iron-sulfur cluster assembly protein SufD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ9_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB09482.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
iron-sulfur cluster assembly protein SufD; K09015 Fe-S cluster assembly protein SufD rbh
SCNpilot_expt_500_bf_scaffold_2914_19
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21853..22614)
DNA (762bp) protein (254aa)
Iron-sulfur cluster assembly ATPase protein SufC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAK0_PELHB
Cysteine desulfurase {ECO:0000313|EMBL:KKB09481.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
iron-sulfur cluster assembly ATPase protein SufC; K09013 Fe-S cluster assembly ATP-binding protein
SCNpilot_expt_500_bf_scaffold_2914_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22675..24204)
DNA (1530bp) protein (510aa)
Iron-sulfur cluster assembly protein SufB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAK2_PELHB rbh
Cysteine desulfurase {ECO:0000313|EMBL:KKB10308.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
iron-sulfur cluster assembly protein SufB; K09014 Fe-S cluster assembly protein SufB rbh
SCNpilot_expt_500_bf_scaffold_2914_21
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24268..24498)
DNA (231bp) protein (77aa)
cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfurase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAK3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32394.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_bf_scaffold_2914_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24495..25400)
DNA (906bp) protein (302aa)
cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfurase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAK3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09480.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2914_23
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25666..26328
DNA (663bp) protein (221aa)
Alpha/beta hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAK4_PELHB rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:KKB77434.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
alpha/beta hydrolase; K07018 rbh
SCNpilot_expt_500_bf_scaffold_2914_24
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26461..27711
DNA (1251bp) protein (417aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
PREDICTED: probable tyrosine--tRNA ligase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C18610 rbh
SCNpilot_expt_500_bf_scaffold_2914_25
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27769..29439)
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAK6_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC31116.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein rbh
Displaying 25 items

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