ggKbase home page

SCNpilot_expt_500_bf_scaffold_7166

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_7166_1
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..860)
DNA (858bp) protein (286aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
tRNA-dihydrouridine synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Z8_PELHB
tRNA dihydrouridine synthase B
SCNpilot_expt_500_bf_scaffold_7166_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1099..2295
DNA (1197bp) protein (399aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Z7_PELHB
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_7166_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2296..2799
DNA (504bp) protein (168aa)
C-terminal domain of CinA type S, protein Implicated in DNA repair function with RecA and MutS n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Z6_PELHB
Damage-inducible protein CinA {ECO:0000313|EMBL:KFL32441.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
C-terminal domain of CinA type S, protein Implicated in DNA repair function with RecA and MutS; K03743
SCNpilot_expt_500_bf_scaffold_7166_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2813..3061)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Ruegeria mobilis F1926 RepID=R0ESH7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CDN95291.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_7166_5
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3120..3566)
DNA (447bp) protein (149aa)
Putative oligoketide cyclase/dehydratase or lipid transport protein YfjG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Z5_PELHB
Putative oligoketide cyclase/dehydratase or lipid transport protein YfjG {ECO:0000313|EMBL:KFC72404.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
putative oligoketide cyclase/dehydratase or lipid transport protein YfjG
SCNpilot_expt_500_bf_scaffold_7166_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3567..4376)
DNA (810bp) protein (270aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
lipoate synthase; K03644 lipoic acid synthetase [EC:2.8.1.8]
Lipoyl synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Z4_PELHB
SCNpilot_expt_500_bf_scaffold_7166_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4564..5604)
DNA (1041bp) protein (347aa)
Putative dehydrogenase n=1 Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=L0A1X8_DEIPD
Uncharacterized protein {ECO:0000313|EMBL:KKB09538.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
dehydrogenase
SCNpilot_expt_500_bf_scaffold_7166_8
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5691..6272)
DNA (582bp) protein (194aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Z2_PELHB
SCNpilot_expt_500_bf_scaffold_7166_9
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6325..6906
DNA (582bp) protein (194aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ91803.1}; TaxID=1830 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber.;"
Displaying 9 items

View Taxonomy