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SCNpilot_expt_500_bf_scaffold_7654

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_7654_1
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..144)
DNA (144bp) protein (48aa)
Peptide ABC transporter permease {ECO:0000313|EMBL:KKB79249.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_7654_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(141..590)
DNA (450bp) protein (150aa)
Dipeptide transport system permease protein DppB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R5Y4_PELHB
Glutathione ABC transporter permease {ECO:0000313|EMBL:KKB08968.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
dipeptide transport system permease DppB; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_500_bf_scaffold_7654_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1199..2767)
DNA (1569bp) protein (523aa)
Dipeptide-binding ABC transporter, periplasmic substrate-binding component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R5Y5_PELHB rbh
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB79247.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
dipeptide-binding ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_7654_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2899..3540
DNA (642bp) protein (214aa)
Conserved uncharacterized protein n=1 Tax=Erwinia billingiae (strain Eb661) RepID=D8MU83_ERWBE
Uncharacterized protein {ECO:0000313|EMBL:KKB79246.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_7654_5
unknown

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comp(3683..4486)
DNA (804bp) protein (268aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_7654_6
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5044..5187
DNA (144bp) protein (48aa)
Nickel ABC transporter, periplasmic nickel-binding protein {ECO:0000313|EMBL:AAN68946.1}; TaxID=160488 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain KT2440).;"
SCNpilot_expt_500_bf_scaffold_7654_7
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5195..6139
DNA (945bp) protein (315aa)
Nickel ABC transporter, permease subunit NikB {ECO:0000313|EMBL:ESS56132.1}; EC=3.6.3.24 {ECO:0000313|EMBL:ESS56132.1};; TaxID=1399146 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae S611.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037999EA rbh
nickel transporter permease NikB; K15585 nickel transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_7654_8
Providencia sneebia, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6136..7011
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B3D69 rbh
Nickel transporter permease NikC {ECO:0000313|EMBL:EKT60351.1}; TaxID=1141660 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Providencia.;" source="Providencia sneebia DSM 19967.;"
nikC; nickel transporter permease NikC; K15586 nickel transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_7654_9
Enterobacter sp. R4-368, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7011..7799
DNA (789bp) protein (263aa)
Nickel import ATP-binding protein NikD {ECO:0000256|HAMAP-Rule:MF_01711}; EC=3.6.3.24 {ECO:0000256|HAMAP-Rule:MF_01711};; TaxID=1166130 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. R4-368.;"
Nickel ABC transporter ATP-binding protein n=1 Tax=Enterobacter sp. R4-368 RepID=R9VN18_9ENTR rbh
nikD; nickel ABC transporter ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_7654_10
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7796..8623
DNA (828bp) protein (276aa)
peptide/nickel transport system ATP-binding protein; K10824 nickel transport system ATP-binding protein [EC:3.6.3.24]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000367935A rbh
Peptide/nickel transport system ATP-binding protein {ECO:0000313|EMBL:BAI71519.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_500_bf_scaffold_7654_11
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8685..9374)
DNA (690bp) protein (230aa)
Putative CAAX amino terminal protease family n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3J4V0_RHOS4
Uncharacterized protein {ECO:0000313|EMBL:KFL28453.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
CAAX amino protease
SCNpilot_expt_500_bf_scaffold_7654_12
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9620..10609
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Glaciecola chathamensis S18K6 RepID=K6XB14_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:KKB82575.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
cscR; sucrose operon repressor
SCNpilot_expt_500_bf_scaffold_7654_13
unknown

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comp(10715..11845)
DNA (1131bp) protein (377aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_7654_14
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12071..12919
DNA (849bp) protein (283aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Tolumonas auensis (strain DSM 9187 / TA4) RepID=C4LCS6_TOLAT rbh
ABC transporter permease {ECO:0000313|EMBL:KKB82577.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_7654_15
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12919..13644
DNA (726bp) protein (242aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Tolumonas auensis (strain DSM 9187 / TA4) RepID=C4LCS7_TOLAT rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB82578.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein rbh
Displaying 15 items

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