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SCNpilot_expt_500_bf_scaffold_2406_12

Organism: SCNPILOT_EXPT_750_P_Devosia_62_26

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 4 ASCG 11 / 38 MC: 2
Location: comp(7477..8199)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase sigma factor n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QK23_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 76.5
  • Coverage: 183.0
  • Bit_score: 285
  • Evalue 6.20e-74
RNA polymerase sigma70 {ECO:0000313|EMBL:KKB10166.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.1
  • Coverage: 183.0
  • Bit_score: 306
  • Evalue 2.80e-80
putative RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 55.3
  • Coverage: 170.0
  • Bit_score: 201
  • Evalue 2.20e-49

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Taxonomy

Devosia chinhatensis → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 723
ATGACCCTGCTCGCAGGCGCGCTATCCCAAAGTTCTTCGGACCCCATGCGCCCCGCCATGAGGGCGAAATGGGCTAAATGGCTGGGCAGAACGACAAAAAACTCACTTTCGCCACAACCATTTTGCTTCACTGGCATTATCGCTATGGGCCAGCGGGGAGTTTTGGGCAGGGTGCGACTTGTTGACGGGGACAATTCCGAACCGTCCGACACGACCGAACAGCTTATCGAACGGGTCAGGGCGGGCGACACGAGGGCATTCGAGCGGTTGATCTCGGAGCACTATCGCTTCATCTACAAGACGGCATTTCGCTGGCTGGGCCATAAGAGTGATGCCGAAGACGTCACGCAGTCGGTTTGCCTCCGACTTGCCGACGCCATGCAGCGGTTTGACGGGCGCTCGAAATTCACCAGCTGGCTTTATAGTGTCACCCTCAACGCCGTCCGCGACCTGCAACGCAGCCACCAGCGACAGGGCAAGCAGATCGCCGCTGTGTCGGTCGTGACCCGCGAGGAAATCGACGCTAACCAGGAAGACCGACTGCGCGTCAACGATATCTGGCGTATAGTGCGGCAATTGCCGGAGAAACAGCGGGACGCCGTCCTGCTGGTCTATGGCGAACAACTCTCGCAGGCGGAAGCAGCCGTGATCATGGGATGCAAGGAAGTGACAGTTTCCTGGCACATCCACAATGCACGCAAGTCGCTGAAGGACTTGCTATGA
PROTEIN sequence
Length: 241
MTLLAGALSQSSSDPMRPAMRAKWAKWLGRTTKNSLSPQPFCFTGIIAMGQRGVLGRVRLVDGDNSEPSDTTEQLIERVRAGDTRAFERLISEHYRFIYKTAFRWLGHKSDAEDVTQSVCLRLADAMQRFDGRSKFTSWLYSVTLNAVRDLQRSHQRQGKQIAAVSVVTREEIDANQEDRLRVNDIWRIVRQLPEKQRDAVLLVYGEQLSQAEAAVIMGCKEVTVSWHIHNARKSLKDLL*