ggKbase home page

SCNpilot_expt_500_bf_scaffold_3217_1

Organism: SCNPILOT_EXPT_750_P_Devosia_62_26

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 4 ASCG 11 / 38 MC: 2
Location: comp(2..211)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.3
  • Coverage: 70.0
  • Bit_score: 153
  • Evalue 1.20e-34
ribosomal large subunit pseudouridine synthase A; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] similarity KEGG
DB: KEGG
  • Identity: 57.1
  • Coverage: 70.0
  • Bit_score: 87
  • Evalue 2.30e-15
Pseudouridine synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBN7_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 57.1
  • Coverage: 70.0
  • Bit_score: 87
  • Evalue 7.20e-15

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Devosia riboflavina → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 210
ATGCCCGGTCCCATGCCCACTCTCATCGATTACTTTCCGCCGACTGAACCCTACCTGAACATCATCCATGTCGATGATGACATTCTGGTCGTGGACAAGCAAAGCGGACTTCTGAGCGTGCCGGGCAAGGACCCCAGCCTCTGGGACTGCATCGAATACCGCGCCCGCCAGACCTGGCCGACGGCCGGCATGTGTCACCGGCTCGACAAG
PROTEIN sequence
Length: 70
MPGPMPTLIDYFPPTEPYLNIIHVDDDILVVDKQSGLLSVPGKDPSLWDCIEYRARQTWPTAGMCHRLDK