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SCNpilot_expt_500_bf_scaffold_1598

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1598_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..821)
DNA (819bp) protein (273aa)
Cell cycle protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNU4_NITHX
cell cycle protein; K03588 cell division protein FtsW
Cell cycle protein {ECO:0000313|EMBL:ABE62103.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_1598_2
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(868..2268)
DNA (1401bp) protein (467aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|RuleBase:RU003664}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|RuleBase:RU003664};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] rbh
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07PT5_RHOP5 rbh
SCNpilot_expt_500_bf_scaffold_1598_3
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2474..3559)
DNA (1086bp) protein (362aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] rbh
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=MRAY_NITHX rbh
SCNpilot_expt_500_bf_scaffold_1598_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3570..5009)
DNA (1440bp) protein (480aa)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] rbh
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNU7_NITHX rbh
SCNpilot_expt_500_bf_scaffold_1598_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5006..6466)
DNA (1461bp) protein (487aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208};
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] rbh
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036F1316 rbh
SCNpilot_expt_500_bf_scaffold_1598_6
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6545..8293)
DNA (1749bp) protein (583aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] rbh
penicillin-binding protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036F513E rbh
Penicillin-binding protein {ECO:0000313|EMBL:KJC52879.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_expt_500_bf_scaffold_1598_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8290..8670)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNV0_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KIZ38890.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1598_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8674..9672)
DNA (999bp) protein (333aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
mraW; S-adenosyl-methyltransferase MraW; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] rbh
16S rRNA methyltransferase n=1 Tax=Afipia birgiae RepID=UPI000301CE17 rbh
SCNpilot_expt_500_bf_scaffold_1598_9
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10148..10957
DNA (810bp) protein (270aa)
negative regulator of AmpC, AmpD; K01447 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] rbh
Negative regulator of AmpC, AmpD n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYL7_RHOP2 rbh
Amidase {ECO:0000313|EMBL:EJZ31118.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
SCNpilot_expt_500_bf_scaffold_1598_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11581..12246
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D5ADEF
Uncharacterized protein {ECO:0000313|EMBL:EGP06273.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
diguanylate cyclase
Displaying 10 items

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