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SCNpilot_expt_500_bf_scaffold_6820

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6820_1
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..115)
DNA (114bp) protein (38aa)
ABC transporter related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3J5_9BRAD
livG5; branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
ABC transporter related protein {ECO:0000313|EMBL:EFI52525.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_500_bf_scaffold_6820_2
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(128..592)
DNA (465bp) protein (155aa)
ABC transporter, putative high-affinity branched-chain amino acid transport permease LivH n=2 Tax=Oligotropha carboxidovorans RepID=B6JAW0_OLICO
livH3; ABC transporter, putative high-affinity branched-chain amino acid transport permease LivH; K01997 branched-chain amino acid transport system permease protein
ABC transporter, putative high-affinity branched-chain amino acid transport permease LivH {ECO:0000313|EMBL:AEI07740.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_6820_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1105..2463)
DNA (1359bp) protein (453aa)
Twin-arginine translocation pathway signal n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3J7_9BRAD
Leucine ABC transporter subunit substrate-binding protein LivK {ECO:0000313|EMBL:CEG06890.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
twin-arginine translocation pathway signal rbh
SCNpilot_expt_500_bf_scaffold_6820_4
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2834..3880)
DNA (1047bp) protein (349aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] rbh
Uroporphyrinogen decarboxylase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYI5_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_6820_5
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3964..6045)
DNA (2082bp) protein (694aa)
ptrB; protease II; K01354 oligopeptidase B [EC:3.4.21.83] rbh
peptidase S9 n=1 Tax=Bradyrhizobium elkanii RepID=UPI000305094A rbh
Peptidase S9 {ECO:0000313|EMBL:KJC38972.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
Displaying 5 items

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