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SCNpilot_expt_500_bf_scaffold_9146

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_9146_1
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..339
DNA (339bp) protein (113aa)
NAD binding site:FAD dependent oxidoreductase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YMJ2_BRASO
NAD binding site:FAD dependent oxidoreductase
NAD binding site:FAD dependent oxidoreductase {ECO:0000313|EMBL:CAL75118.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCNpilot_expt_500_bf_scaffold_9146_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(446..631)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUL2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31135.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_9146_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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860..1066
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034C654D
Uncharacterized protein {ECO:0000313|EMBL:EAQ34982.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_9146_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1389..1901)
DNA (513bp) protein (171aa)
Diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J052_RHOP2
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ABD06158.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_500_bf_scaffold_9146_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2029..2517
DNA (489bp) protein (163aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. L
phosphoribosylaminoimidazole carboxylase catalytic subunit; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000315C978
SCNpilot_expt_500_bf_scaffold_9146_6
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2514..3623
DNA (1110bp) protein (370aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizo
purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] rbh
Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IF38_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_9146_7
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3691..4407)
DNA (717bp) protein (239aa)
Aquaporin Z n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D8Q3_BRAJP rbh
Aquaporin Z {ECO:0000256|HAMAP-Rule:MF_01146}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
aquaporin; K06188 aquaporin Z rbh
SCNpilot_expt_500_bf_scaffold_9146_8
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4670..4975
DNA (306bp) protein (102aa)
30S ribosomal protein S21 n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G0Z0_9BRAD
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_expt_500_bf_scaffold_9146_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5453..5977
DNA (525bp) protein (175aa)
LysR family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI0002E46EB5
ModE molybdate transport repressor domain-containing protein {ECO:0000313|EMBL:EKS37030.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_9146_10
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5920..6477
DNA (558bp) protein (186aa)
LysR family transcriptional regulator n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003788B8D
MolR family transcriptional regulator {ECO:0000313|EMBL:KJC49560.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
molybdate metabolism transcriptional regulator
SCNpilot_expt_500_bf_scaffold_9146_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6481..7188)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNY7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62060.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_9146_12
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7293..7703)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI00036879A7
Uncharacterized protein {ECO:0000313|EMBL:KIC56270.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_9146_13
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7700..8761)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI00036879A7
Uncharacterized protein {ECO:0000313|EMBL:KIC56270.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_9146_14
unknown

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comp(8845..9234)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_9146_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9287..9574)
DNA (288bp) protein (96aa)
cupin n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034DC783
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD06150.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_500_bf_scaffold_9146_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9592..9747)
DNA (156bp) protein (52aa)
Calcium/proton antiporter n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFZ8_9BRAD
Calcium/proton exchanger {ECO:0000313|EMBL:EKS35216.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
sodium/calcium exchanger membrane region; K07300 Ca2+:H+ antiporter
Displaying 16 items

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