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SCNpilot_expt_500_bf_scaffold_3803

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3803_1
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1805)
DNA (1803bp) protein (601aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
aconitate hydratase 1; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase 1 n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VJS7_RHOPX
SCNpilot_expt_500_bf_scaffold_3803_2
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2013..2615
DNA (603bp) protein (201aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
cytochrome c biogenesis protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
Cytochrome c biogenesis ATP-binding export protein CcmA n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IHS0_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_3803_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2612..3280
DNA (669bp) protein (223aa)
Heme exporter protein B n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IEG5_9BRAD rbh
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
heme exporter protein CcmB; K02194 heme exporter protein B rbh
SCNpilot_expt_500_bf_scaffold_3803_4
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3428..4159
DNA (732bp) protein (244aa)
Heme exporter protein CcmC n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WDC7_9BRAD rbh
Heme exporter protein CcmC {ECO:0000313|EMBL:EJN10665.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
ccmC; heme exporter protein C; K02195 heme exporter protein C rbh
SCNpilot_expt_500_bf_scaffold_3803_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4165..4344
DNA (180bp) protein (60aa)
hemagglutination activity protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000310437C
Hemagglutination activity protein {ECO:0000313|EMBL:KJC55343.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ccmD; heme exporter protein D
SCNpilot_expt_500_bf_scaffold_3803_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4341..4928
DNA (588bp) protein (196aa)
Periplasmic protein thiol n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR43_NITHX rbh
periplasmic protein thiol-disulfide oxidoreductase DsbE; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE rbh
Periplasmic protein thiol {ECO:0000313|EMBL:ABE61304.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_3803_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5038..5403
DNA (366bp) protein (122aa)
DNA-binding protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034CEC9E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD85785.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_bf_scaffold_3803_8
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5469..6086)
DNA (618bp) protein (206aa)
Probable intracellular septation protein A n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=YCIB_BRADU rbh
Probable intracellular septation protein A {ECO:0000256|SAAS:SAAS00082307}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
intracellular septation protein A; K06190 intracellular septation protein rbh
SCNpilot_expt_500_bf_scaffold_3803_9
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6088..6774)
DNA (687bp) protein (229aa)
Signal recognition particle receptor FtsY n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CU9_RHOPB
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor
SCNpilot_expt_500_bf_scaffold_3803_10
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7536..7742
DNA (207bp) protein (69aa)
hypothetical protein; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QKV8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:BAR57200.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_expt_500_bf_scaffold_3803_11
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7866..9005)
DNA (1140bp) protein (380aa)
2-methylthioadenine synthase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003051E4A
Putative MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:CCE03504.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
MiaB-like tRNA modifying enzyme
SCNpilot_expt_500_bf_scaffold_3803_12
unknown

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9466..9756
DNA (291bp) protein (97aa)

This feature has no annotations

Displaying 12 items

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